Literature DB >> 19703449

System-level feedbacks control cell cycle progression.

Orsolya Kapuy1, Enuo He, Sandra López-Avilés, Frank Uhlmann, John J Tyson, Béla Novák.   

Abstract

Repetitive cell cycles, which are essential to the perpetuation of life, are orchestrated by an underlying biochemical reaction network centered around cyclin-dependent protein kinases (Cdks) and their regulatory subunits (cyclins). Oscillations of Cdk1/CycB activity between low and high levels during the cycle trigger DNA replication and mitosis in the correct order. Based on computational modeling, we proposed that the low and the high kinase activity states are alternative stable steady states of a bistable Cdk-control system. Bistability is a consequence of system-level feedback (positive and double-negative feedback signals) in the underlying control system. We have also argued that bistability underlies irreversible transitions between low and high Cdk activity states and thereby ensures directionality of cell cycle progression.

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Year:  2009        PMID: 19703449      PMCID: PMC3811919          DOI: 10.1016/j.febslet.2009.08.023

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  47 in total

1.  Systems-level dissection of the cell-cycle oscillator: bypassing positive feedback produces damped oscillations.

Authors:  Joseph R Pomerening; Sun Young Kim; James E Ferrell
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Review 2.  The anaphase promoting complex/cyclosome: a machine designed to destroy.

Authors:  Jan-Michael Peters
Journal:  Nat Rev Mol Cell Biol       Date:  2006-08-09       Impact factor: 94.444

3.  Irreversible cell-cycle transitions are due to systems-level feedback.

Authors:  Bela Novak; John J Tyson; Bela Gyorffy; Attila Csikasz-Nagy
Journal:  Nat Cell Biol       Date:  2007-07       Impact factor: 28.824

4.  Exploring the roles of noise in the eukaryotic cell cycle.

Authors:  Sandip Kar; William T Baumann; Mark R Paul; John J Tyson
Journal:  Proc Natl Acad Sci U S A       Date:  2009-02-25       Impact factor: 11.205

5.  The reversibility of mitotic exit in vertebrate cells.

Authors:  Tamara A Potapova; John R Daum; Bradley D Pittman; Joanna R Hudson; Tara N Jones; David L Satinover; P Todd Stukenberg; Gary J Gorbsky
Journal:  Nature       Date:  2006-04-13       Impact factor: 49.962

Review 6.  Temporal organization of the cell cycle.

Authors:  John J Tyson; Bela Novak
Journal:  Curr Biol       Date:  2008-09-09       Impact factor: 10.834

7.  Fine tuning the cell cycle: activation of the Cdk1 inhibitory phosphorylation pathway during mitotic exit.

Authors:  Tamara A Potapova; John R Daum; Kendra S Byrd; Gary J Gorbsky
Journal:  Mol Biol Cell       Date:  2009-01-21       Impact factor: 4.138

Review 8.  The spindle-assembly checkpoint in space and time.

Authors:  Andrea Musacchio; Edward D Salmon
Journal:  Nat Rev Mol Cell Biol       Date:  2007-04-11       Impact factor: 94.444

9.  Cdk1 is sufficient to drive the mammalian cell cycle.

Authors:  David Santamaría; Cédric Barrière; Antonio Cerqueira; Sarah Hunt; Claudine Tardy; Kathryn Newton; Javier F Cáceres; Pierre Dubus; Marcos Malumbres; Mariano Barbacid
Journal:  Nature       Date:  2007-08-16       Impact factor: 49.962

10.  Cell cycle regulation by feed-forward loops coupling transcription and phosphorylation.

Authors:  Attila Csikász-Nagy; Orsolya Kapuy; Attila Tóth; Csaba Pál; Lars Juhl Jensen; Frank Uhlmann; John J Tyson; Béla Novák
Journal:  Mol Syst Biol       Date:  2009-01-20       Impact factor: 11.429

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  14 in total

1.  Computational modeling of signaling pathways mediating cell cycle checkpoint control and apoptotic responses to ionizing radiation-induced DNA damage.

Authors:  Yuchao Zhao; In Chio Lou; Rory B Conolly
Journal:  Dose Response       Date:  2011-10-25       Impact factor: 2.658

2.  The sensitivity of memory consolidation and reconsolidation to inhibitors of protein synthesis and kinases: computational analysis.

Authors:  Yili Zhang; Paul Smolen; Douglas A Baxter; John H Byrne
Journal:  Learn Mem       Date:  2010-08-24       Impact factor: 2.460

3.  Optimal homeostasis necessitates bistable control.

Authors:  Guanyu Wang
Journal:  J R Soc Interface       Date:  2012-04-25       Impact factor: 4.118

4.  Modeling Dose-response at Low Dose: A Systems Biology Approach for Ionization Radiation.

Authors:  Yuchao Zhao; Paolo F Ricci
Journal:  Dose Response       Date:  2010-03-18       Impact factor: 2.658

5.  Generic Properties of Random Gene Regulatory Networks.

Authors:  Zhiyuan Li; Simone Bianco; Zhaoyang Zhang; Chao Tang
Journal:  Quant Biol       Date:  2013-12

6.  System-level feedbacks make the anaphase switch irreversible.

Authors:  Enuo He; Orsolya Kapuy; Raquel A Oliveira; Frank Uhlmann; John J Tyson; Béla Novák
Journal:  Proc Natl Acad Sci U S A       Date:  2011-05-26       Impact factor: 11.205

Review 7.  Quantitative analysis of cellular metabolic dissipative, self-organized structures.

Authors:  Ildefonso Martínez de la Fuente
Journal:  Int J Mol Sci       Date:  2010-09-27       Impact factor: 5.923

8.  E2F1-mediated upregulation of p19INK4d determines its periodic expression during cell cycle and regulates cellular proliferation.

Authors:  Abel L Carcagno; Mariela C Marazita; María F Ogara; Julieta M Ceruti; Silvina V Sonzogni; María E Scassa; Luciana E Giono; Eduardo T Cánepa
Journal:  PLoS One       Date:  2011-07-13       Impact factor: 3.240

9.  Transcriptional regulation is a major controller of cell cycle transition dynamics.

Authors:  Alessandro Romanel; Lars Juhl Jensen; Luca Cardelli; Attila Csikász-Nagy
Journal:  PLoS One       Date:  2012-01-06       Impact factor: 3.240

10.  A Dynamic Gene Regulatory Network Model That Recovers the Cyclic Behavior of Arabidopsis thaliana Cell Cycle.

Authors:  Elizabeth Ortiz-Gutiérrez; Karla García-Cruz; Eugenio Azpeitia; Aaron Castillo; María de la Paz Sánchez; Elena R Álvarez-Buylla
Journal:  PLoS Comput Biol       Date:  2015-09-04       Impact factor: 4.475

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