Literature DB >> 16128589

Ground-state, transition-state, and metal-cation effects of the 2-hydroxyl group on beta-D-galactopyranosyl transfer catalyzed by beta-galactosidase (Escherichia coli, lac Z).

John P Richard1, Deborah A McCall, Christina K Heo, Maria M Toteva.   

Abstract

Substitution of the C2-OH group by C2-H at 4-nitrophenyl-beta-d-galactopyranoside to give 4-nitrophenyl-2-deoxy-beta-d-galactopyranoside causes (1) a change in the rate-determining step for beta-galactosidase-catalyzed sugar hydrolysis from formation to breakdown of a covalent intermediate; (2) a 14 000-fold decrease in the second-order rate constant k(3)/K(d) for enzyme-catalyzed transfer of the beta-d-galactopyranosyl group from the substrate to form a covalent adduct to the enzyme; and (3) a larger 320 000-fold decrease in the first-order rate constant k(s) for hydrolysis of this covalent adduct. Only a small fraction (ca. 7%) of the 2-OH substituent effect is expressed in the ground-state Michaelis complex, so that the (apparent) strong interactions between the enzyme and 2-OH group that stabilize the transition state for beta-d-galactopyranosyl transfer only develop upon moving from the Michaelis complex to the transition state. Mg(2+) activates beta-galactosidase for cleavage of both 4-nitrophenyl-beta-d-galactopyranoside and 4-nitrophenyl-2-deoxy-beta-d-galactopyranoside. This suggests that Mg(2+) activation does not involve interactions with the 2-OH group. The removal of Mg(2+) from beta-galactosidase causes a change in the rate-determining step for enzyme-catalyzed hydrolysis of 4-nitrophenyl-2-deoxy-beta-d-galactopyranoside from breakdown to formation of the covalent intermediate. The observed 2-OH effect would require a very large (10-11 kcal/mol) stabilization of the transition state for beta-d-galactopyranosyl group transfer to water by interactions between beta-galactosidase and the neutral 2-OH group. We suggest that the apparent effect of the neutral substituent is more simply rationalized by ionization of the 2-OH to form a 2-O(-) anion, which provides effective electrostatic stabilization of the cationic transition state for glycoside cleavage at an active site of relatively low dielectric constant.

Entities:  

Mesh:

Substances:

Year:  2005        PMID: 16128589     DOI: 10.1021/bi050936q

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  4 in total

1.  Direct and indirect roles of His-418 in metal binding and in the activity of beta-galactosidase (E. coli).

Authors:  Douglas H Juers; Beatrice Rob; Megan L Dugdale; Nastaron Rahimzadeh; Clarence Giang; Michelle Lee; Brian W Matthews; Reuben E Huber
Journal:  Protein Sci       Date:  2009-06       Impact factor: 6.725

2.  Binding energy and catalysis by D-xylose isomerase: kinetic, product, and X-ray crystallographic analysis of enzyme-catalyzed isomerization of (R)-glyceraldehyde.

Authors:  Maria M Toteva; Nicholas R Silvaggi; Karen N Allen; John P Richard
Journal:  Biochemistry       Date:  2011-10-27       Impact factor: 3.162

3.  Structure-Reactivity Relationships for β-Galactosidase (Escherichia coli, lac Z): A Second Derivative Effect on β(nuc) for Addition of Alkyl Alcohols to an Oxocarbenium Ion Reaction Intermediate.

Authors:  John P Richard; Christina K Heo; Maria M Toteva
Journal:  J Phys Org Chem       Date:  2008-07-01       Impact factor: 2.391

Review 4.  Linear Free Energy Relationships for Enzymatic Reactions: Fresh Insight from a Venerable Probe.

Authors:  John P Richard; Judith R Cristobal; Tina L Amyes
Journal:  Acc Chem Res       Date:  2021-05-03       Impact factor: 22.384

  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.