Literature DB >> 19669515

Hydration profiles of amyloidogenic molecular structures.

Florin Despa1, Ariel Fernández, L Ridgway Scott, R Stephen Berry.   

Abstract

Hydration shells of normal proteins display regions of highly structured water as well as patches of less structured bulk-like water. Recent studies suggest that isomers with larger surface densities of patches of bulk-like water have an increased propensity to aggregate. These aggregates are toxic to the cellular environment. Hence, the early detection of these toxic deposits is of paramount medical importance. We show that various morphological states of association of such isomers can be differentiated from the normal protein background based on the characteristic partition between bulk, caged, and surface hydration water and the magnetic resonance (MR) signals of this water. We derive simple mathematical equations relating the compartmentalization of water to the local hydration fraction and the packing density of the newly formed molecular assemblies. Then, we employ these equations to predict the MR response of water constrained by protein aggregation. Our results indicate that single units and compact aggregates that contain no water between constituents induce a shift of the MR signal from normal protein background to values in the hyperintensity domain (bright spots), corresponding to bulk water. In contrast, large plaques that cage significant amounts of water between constituents are likely to generate MR responses in the hypointensity domain (dark spots), typical for strongly correlated water. The implication of these results is that amyloids can display both dark and bright spots when compared to the normal gray background tissue on MR images. In addition, our findings predict that the bright spots are more likely to correspond to amyloids in their early stage of development. The results help explain the MR contrast patterns of amyloids and suggest a new approach for identifying unusual protein aggregation related to disease.

Entities:  

Year:  2008        PMID: 19669515      PMCID: PMC2603265          DOI: 10.1007/s10867-008-9122-z

Source DB:  PubMed          Journal:  J Biol Phys        ISSN: 0092-0606            Impact factor:   1.365


  46 in total

1.  Biological water at the protein surface: dynamical solvation probed directly with femtosecond resolution.

Authors:  Samir Kumar Pal; Jorge Peon; Ahmed H Zewail
Journal:  Proc Natl Acad Sci U S A       Date:  2002-02-12       Impact factor: 11.205

2.  Slaving: solvent fluctuations dominate protein dynamics and functions.

Authors:  P W Fenimore; H Frauenfelder; B H McMahon; F G Parak
Journal:  Proc Natl Acad Sci U S A       Date:  2002-11-20       Impact factor: 11.205

3.  beta-Helix is a likely core structure of yeast prion Sup35 amyloid fibers.

Authors:  Aiko Kishimoto; Kazuya Hasegawa; Hirofumi Suzuki; Hideki Taguchi; Keiichi Namba; Masasuke Yoshida
Journal:  Biochem Biophys Res Commun       Date:  2004-03-12       Impact factor: 3.575

Review 4.  Probing the pressure-temperature stability of amyloid fibrils provides new insights into their molecular properties.

Authors:  Filip Meersman; Christopher M Dobson
Journal:  Biochim Biophys Acta       Date:  2005-11-16

5.  Structural and hydration properties of the partially unfolded states of the prion protein.

Authors:  Alfonso De Simone; Adriana Zagari; Philippe Derreumaux
Journal:  Biophys J       Date:  2007-05-04       Impact factor: 4.033

6.  Hydrophobic potential of mean force as a solvation function for protein structure prediction.

Authors:  Matthew S Lin; Nicolas Lux Fawzi; Teresa Head-Gordon
Journal:  Structure       Date:  2007-06       Impact factor: 5.006

7.  The hydration of globular proteins as derived from volume and compressibility measurements: cross correlating thermodynamic and structural data.

Authors:  T V Chalikian; M Totrov; R Abagyan; K J Breslauer
Journal:  J Mol Biol       Date:  1996-07-26       Impact factor: 5.469

8.  Detection of neuritic plaques in Alzheimer's disease by magnetic resonance microscopy.

Authors:  H Benveniste; G Einstein; K R Kim; C Hulette; G A Johnson
Journal:  Proc Natl Acad Sci U S A       Date:  1999-11-23       Impact factor: 11.205

9.  Prion disease: exponential growth requires membrane binding.

Authors:  Daniel L Cox; Rajiv R P Sing; Sichun Yang
Journal:  Biophys J       Date:  2006-03-31       Impact factor: 4.033

10.  Thermal denaturation of ribonuclease A characterized by water 17O and 2H magnetic relaxation dispersion.

Authors:  V P Denisov; B Halle
Journal:  Biochemistry       Date:  1998-06-30       Impact factor: 3.162

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  1 in total

1.  Amyloid oligomer formation probed by water proton magnetic resonance spectroscopy.

Authors:  J H Walton; R S Berry; F Despa
Journal:  Biophys J       Date:  2011-05-04       Impact factor: 4.033

  1 in total

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