Literature DB >> 19669510

A model coupling vibrational and rotational motion for the DNA molecule.

R A S Silva1, E Drigo Filho, J R Ruggiero.   

Abstract

We investigate a mechanical model for the DNA molecule using an extension of the Peyrard and Bishop model. In the present model, there are two chains of oscillators linked by a Morse potential, which represent the hydrogen bonds. The rotational and vibrational motions of each base pair are considered and the coupling for these motions are introduced by a nonlinear combination of them in the Morse potential. In this context, thermodynamics and structural properties are discussed.

Entities:  

Year:  2008        PMID: 19669510      PMCID: PMC2652549          DOI: 10.1007/s10867-008-9111-2

Source DB:  PubMed          Journal:  J Biol Phys        ISSN: 0092-0606            Impact factor:   1.365


  11 in total

1.  Bubble dynamics in double-stranded DNA.

Authors:  Grégoire Altan-Bonnet; Albert Libchaber; Oleg Krichevsky
Journal:  Phys Rev Lett       Date:  2003-04-01       Impact factor: 9.161

2.  Molecular structure of nucleic acids; a structure for deoxyribose nucleic acid.

Authors:  J D WATSON; F H CRICK
Journal:  Nature       Date:  1953-04-25       Impact factor: 49.962

3.  Topological origin of the phase transition in a model of DNA denaturation.

Authors:  Paolo Grinza; Alessandro Mossa
Journal:  Phys Rev Lett       Date:  2004-04-16       Impact factor: 9.161

4.  Energy localization in the Peyrard-Bishop DNA model.

Authors:  Jayme De Luca; Elso Drigo Filho; Antonio Ponno; José Roberto Ruggiero
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2004-08-27

5.  Statistical mechanics of a nonlinear model for DNA denaturation.

Authors: 
Journal:  Phys Rev Lett       Date:  1989-06-05       Impact factor: 9.161

6.  Single-molecule unzippering experiments on DNA and Peyrard-Bishop-Dauxois model.

Authors:  Slobodan Zdravković; Miljko V Satarić
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2006-02-14

7.  Breathing dynamics in heteropolymer DNA.

Authors:  Tobias Ambjörnsson; Suman K Banik; Oleg Krichevsky; Ralf Metzler
Journal:  Biophys J       Date:  2007-01-19       Impact factor: 4.033

8.  Quantum mechanical study of bases interactions in various associates in atomic dipole approximation.

Authors:  Z G Kudritskaya; V I Danilov
Journal:  J Theor Biol       Date:  1976-07-07       Impact factor: 2.691

9.  Nature of the open state in long polynucleotide double helices: possibility of soliton excitations.

Authors:  S W Englander; N R Kallenbach; A J Heeger; J A Krumhansl; S Litwin
Journal:  Proc Natl Acad Sci U S A       Date:  1980-12       Impact factor: 11.205

10.  Mapping the phase diagram of single DNA molecule force-induced melting in the presence of ethidium.

Authors:  Ioana D Vladescu; Micah J McCauley; Ioulia Rouzina; Mark C Williams
Journal:  Phys Rev Lett       Date:  2005-10-06       Impact factor: 9.161

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  3 in total

1.  Charge transport in a DNA model with solvent interaction.

Authors:  H Ngoubi; G H Ben-Bolie; T C Kofané
Journal:  J Biol Phys       Date:  2018-07-03       Impact factor: 1.365

2.  Charge transport in DNA model with vibrational and rotational coupling motions.

Authors:  H Ngoubi; G H Ben-Bolie; T C Kofané
Journal:  J Biol Phys       Date:  2017-07-20       Impact factor: 1.365

3.  A Mathematical Model for Vibration Behavior Analysis of DNA and Using a Resonant Frequency of DNA for Genome Engineering.

Authors:  Mobin Marvi; Majid Ghadiri
Journal:  Sci Rep       Date:  2020-02-26       Impact factor: 4.996

  3 in total

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