Literature DB >> 15447571

Energy localization in the Peyrard-Bishop DNA model.

Jayme De Luca1, Elso Drigo Filho, Antonio Ponno, José Roberto Ruggiero.   

Abstract

We study energy localization on the oscillator chain proposed by Peyrard and Bishop to model DNA. We search numerically for conditions with initial energy in a small subgroup of consecutive oscillators of a finite chain and such that the oscillation amplitude is small outside this subgroup on a long time scale. We use a localization criterion based on the information entropy and verify numerically that such localized excitations exist when the nonlinear dynamics of the subgroup oscillates with a frequency inside the reactive band of the linear chain. We predict a mimium value for the Morse parameter (micro>2.25) (the only parameter of our normalized model), in agreement with the numerical calculations (an estimate for the biological value is micro=6.3 ). For supercritical masses, we use canonical perturbation theory to expand the frequencies of the subgroup and we calculate an energy threshold in agreement with the numerical calculations.

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Year:  2004        PMID: 15447571     DOI: 10.1103/PhysRevE.70.026213

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  3 in total

1.  High-order nonlinear excitations in the Joyeux-Buyukdagli model of DNA.

Authors:  Ying-Bo Yao; Xiao-Yun Wang; Bing Tang
Journal:  J Biol Phys       Date:  2015-10-21       Impact factor: 1.365

2.  Localization and delocalization of energy in a Peyrard-Bishop chain.

Authors:  J M Silva; E Drigo Filho; J R Ruggiero
Journal:  Eur Phys J E Soft Matter       Date:  2009-06-24       Impact factor: 1.890

3.  A model coupling vibrational and rotational motion for the DNA molecule.

Authors:  R A S Silva; E Drigo Filho; J R Ruggiero
Journal:  J Biol Phys       Date:  2008-09-17       Impact factor: 1.365

  3 in total

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