Literature DB >> 19668873

Screening of a branched peptide library with HIV-1 TAR RNA.

David I Bryson1, Wenyu Zhang, W Keith Ray, Webster L Santos.   

Abstract

The recognition that RNA is more than just an intermediate in the information transfer from genetic code to fully functional protein has placed it at the forefront of chemical research. RNA is important because of its vital role in regulating transcription, translation, splicing, replication and catalysis. Consequently, molecules that can bind to RNA and control its function have potential as powerful tools in biology and medicine. Herein, we report the discovery of HIV-1 TAR RNA-selective ligands using an on-bead screening of a library of 4096 branched peptides.

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Year:  2009        PMID: 19668873     DOI: 10.1039/b904304g

Source DB:  PubMed          Journal:  Mol Biosyst        ISSN: 1742-2051


  13 in total

1.  Toward targeting RNA structure: branched peptides as cell-permeable ligands to TAR RNA.

Authors:  David I Bryson; Wenyu Zhang; Patrick M McLendon; Theresa M Reineke; Webster L Santos
Journal:  ACS Chem Biol       Date:  2011-10-28       Impact factor: 5.100

2.  Molecular recognition of HIV-1 RNAs with branched peptides.

Authors:  Ashley N Peralta; Yumin Dai; Chringma Sherpa; Stuart F J Le Grice; Webster L Santos
Journal:  Methods Enzymol       Date:  2019-05-15       Impact factor: 1.600

3.  The development of peptide ligands that target helix 69 rRNA of bacterial ribosomes.

Authors:  Danielle N Dremann; Christine S Chow
Journal:  Bioorg Med Chem       Date:  2016-07-25       Impact factor: 3.641

4.  Facile analysis and sequencing of linear and branched peptide boronic acids by MALDI mass spectrometry.

Authors:  Jason B Crumpton; Wenyu Zhang; Webster L Santos
Journal:  Anal Chem       Date:  2011-03-30       Impact factor: 6.986

5.  Peptide-functionalized oxime hydrogels with tunable mechanical properties and gelation behavior.

Authors:  Fei Lin; Jiayi Yu; Wen Tang; Jukuan Zheng; Adrian Defante; Kai Guo; Chrys Wesdemiotis; Matthew L Becker
Journal:  Biomacromolecules       Date:  2013-10-03       Impact factor: 6.988

Review 6.  Structural determinants and mechanism of HIV-1 genome packaging.

Authors:  Kun Lu; Xiao Heng; Michael F Summers
Journal:  J Mol Biol       Date:  2011-07-22       Impact factor: 5.469

7.  Branched peptide boronic acids (BPBAs): a novel mode of binding towards RNA.

Authors:  Wenyu Zhang; David I Bryson; Jason B Crumpton; Jessica Wynn; Webster L Santos
Journal:  Chem Commun (Camb)       Date:  2013-03-25       Impact factor: 6.222

8.  Discovery of a Branched Peptide That Recognizes the Rev Response Element (RRE) RNA and Blocks HIV-1 Replication.

Authors:  Yumin Dai; Jessica E Wynn; Ashley N Peralta; Chringma Sherpa; Bhargavi Jayaraman; Hao Li; Astha Verma; Alan D Frankel; Stuart F Le Grice; Webster L Santos
Journal:  J Med Chem       Date:  2018-10-18       Impact factor: 7.446

9.  Effect of intercalator and Lewis acid-base branched peptide complex formation: boosting affinity towards HIV-1 RRE RNA.

Authors:  Jessica E Wynn; Wenyu Zhang; Denis M Tebit; Laurie R Gray; Marie-Louise Hammarskjold; David Rekosh; Webster L Santos
Journal:  Medchemcomm       Date:  2016-06-06       Impact factor: 3.597

10.  Characterization and in vitro activity of a branched peptide boronic acid that interacts with HIV-1 RRE RNA.

Authors:  Jessica E Wynn; Wenyu Zhang; Denis M Tebit; Laurie R Gray; Marie-Louise Hammarskjold; David Rekosh; Webster L Santos
Journal:  Bioorg Med Chem       Date:  2016-04-05       Impact factor: 3.641

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