Literature DB >> 16488479

Online detection and sorting of extracellularly recorded action potentials in human medial temporal lobe recordings, in vivo.

Ueli Rutishauser1, Erin M Schuman, Adam N Mamelak.   

Abstract

Understanding the function of complex cortical circuits requires the simultaneous recording of action potentials from many neurons in awake and behaving animals. Practically, this can be achieved by extracellularly recording from multiple brain sites using single wire electrodes. However, in densely packed neural structures such as the human hippocampus, a single electrode can record the activity of multiple neurons. Thus, analytic techniques that differentiate action potentials of different neurons are required. Offline spike sorting approaches are currently used to detect and sort action potentials after finishing the experiment. Because the opportunities to record from the human brain are relatively rare, it is desirable to analyze large numbers of simultaneous recordings quickly using online sorting and detection algorithms. In this way, the experiment can be optimized for the particular response properties of the recorded neurons. Here we present and evaluate a method that is capable of detecting and sorting extracellular single-wire recordings in realtime. We demonstrate the utility of the method by applying it to an extensive data set we acquired from chronically implanted depth electrodes in the hippocampus of human epilepsy patients. This dataset is particularly challenging because it was recorded in a noisy clinical environment. This method will allow the development of "closed-loop" experiments, which immediately adapt the experimental stimuli and/or tasks to the neural response observed.

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Year:  2006        PMID: 16488479     DOI: 10.1016/j.jneumeth.2005.12.033

Source DB:  PubMed          Journal:  J Neurosci Methods        ISSN: 0165-0270            Impact factor:   2.390


  69 in total

1.  Cellular Classes in the Human Brain Revealed In Vivo by Heartbeat-Related Modulation of the Extracellular Action Potential Waveform.

Authors:  Clayton P Mosher; Yina Wei; Jan Kamiński; Anirban Nandi; Adam N Mamelak; Costas A Anastassiou; Ueli Rutishauser
Journal:  Cell Rep       Date:  2020-03-10       Impact factor: 9.423

2.  Minimum requirements for accurate and efficient real-time on-chip spike sorting.

Authors:  Joaquin Navajas; Deren Y Barsakcioglu; Amir Eftekhar; Andrew Jackson; Timothy G Constandinou; Rodrigo Quian Quiroga
Journal:  J Neurosci Methods       Date:  2014-04-24       Impact factor: 2.390

3.  SHYBRID: A Graphical Tool for Generating Hybrid Ground-Truth Spiking Data for Evaluating Spike Sorting Performance.

Authors:  Jasper Wouters; Fabian Kloosterman; Alexander Bertrand
Journal:  Neuroinformatics       Date:  2021-01

4.  A NWB-based dataset and processing pipeline of human single-neuron activity during a declarative memory task.

Authors:  N Chandravadia; D Liang; A G P Schjetnan; A Carlson; M Faraut; J M Chung; C M Reed; B Dichter; U Maoz; S K Kalia; T A Valiante; A N Mamelak; U Rutishauser
Journal:  Sci Data       Date:  2020-03-04       Impact factor: 6.444

5.  Abstract goal representation in visual search by neurons in the human pre-supplementary motor area.

Authors:  Shuo Wang; Adam N Mamelak; Ralph Adolphs; Ueli Rutishauser
Journal:  Brain       Date:  2019-11-01       Impact factor: 13.501

6.  Focal expression of mutant huntingtin in the songbird basal ganglia disrupts cortico-basal ganglia networks and vocal sequences.

Authors:  Masashi Tanaka; Jonnathan Singh Alvarado; Malavika Murugan; Richard Mooney
Journal:  Proc Natl Acad Sci U S A       Date:  2016-03-07       Impact factor: 11.205

7.  Spike sorting of synchronous spikes from local neuron ensembles.

Authors:  Felix Franke; Robert Pröpper; Henrik Alle; Philipp Meier; Jörg R P Geiger; Klaus Obermayer; Matthias H J Munk
Journal:  J Neurophysiol       Date:  2015-08-19       Impact factor: 2.714

8.  Development and validation of a spike detection and classification algorithm aimed at implementation on hardware devices.

Authors:  E Biffi; D Ghezzi; A Pedrocchi; G Ferrigno
Journal:  Comput Intell Neurosci       Date:  2010-03-14

Review 9.  An online spike detection and spike classification algorithm capable of instantaneous resolution of overlapping spikes.

Authors:  Felix Franke; Michal Natora; Clemens Boucsein; Matthias H J Munk; Klaus Obermayer
Journal:  J Comput Neurosci       Date:  2009-06-05       Impact factor: 1.621

10.  Activity of human hippocampal and amygdala neurons during retrieval of declarative memories.

Authors:  Ueli Rutishauser; Erin M Schuman; Adam N Mamelak
Journal:  Proc Natl Acad Sci U S A       Date:  2007-12-27       Impact factor: 11.205

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