Literature DB >> 19666489

On the remarkable mechanostability of scaffoldins and the mechanical clamp motif.

Alejandro Valbuena1, Javier Oroz, Rubén Hervás, Andrés Manuel Vera, David Rodríguez, Margarita Menéndez, Joanna I Sulkowska, Marek Cieplak, Mariano Carrión-Vázquez.   

Abstract

Protein mechanostability is a fundamental biological property that can only be measured by single-molecule manipulation techniques. Such studies have unveiled a variety of highly mechanostable modules (mainly of the Ig-like, beta-sandwich type) in modular proteins subjected to mechanical stress from the cytoskeleton and the metazoan cell-cell interface. Their mechanostability is often attributed to a "mechanical clamp" of secondary structure (a patch of backbone hydrogen bonds) fastening their ends. Here we investigate the nanomechanics of scaffoldins, an important family of scaffolding proteins that assembles a variety of cellulases into the so-called cellulosome, a microbial extracellular nanomachine for cellulose adhesion and degradation. These proteins anchor the microbial cell to cellulose substrates, which makes their connecting region likely to be subjected to mechanical stress. By using single-molecule force spectroscopy based on atomic force microscopy, polyprotein engineering, and computer simulations, here we show that the cohesin I modules from the connecting region of cellulosome scaffoldins are the most robust mechanical proteins studied experimentally or predicted from the entire Protein Data Bank. The mechanostability of the cohesin modules studied correlates well with their mechanical kinetic stability but not with their thermal stability, and it is well predicted by computer simulations, even coarse-grained. This extraordinary mechanical stability is attributed to 2 mechanical clamps in tandem. Our findings provide the current upper limit of protein mechanostability and establish shear mechanical clamps as a general structural/functional motif widespread in proteins putatively subjected to mechanical stress. These data have important implications for the scaffoldin physiology and for protein design in biotechnology and nanotechnology.

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Year:  2009        PMID: 19666489      PMCID: PMC2719556          DOI: 10.1073/pnas.0813093106

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  36 in total

1.  Multiple conformations of PEVK proteins detected by single-molecule techniques.

Authors:  H Li; A F Oberhauser; S D Redick; M Carrion-Vazquez; H P Erickson; J M Fernandez
Journal:  Proc Natl Acad Sci U S A       Date:  2001-08-28       Impact factor: 11.205

2.  The myosin coiled-coil is a truly elastic protein structure.

Authors:  Ingo Schwaiger; Clara Sattler; Daniel R Hostetter; Matthias Rief
Journal:  Nat Mater       Date:  2002-12       Impact factor: 43.841

3.  Reverse engineering of the giant muscle protein titin.

Authors:  Hongbin Li; Wolfgang A Linke; Andres F Oberhauser; Mariano Carrion-Vazquez; Jason G Kerkvliet; Hui Lu; Piotr E Marszalek; Julio M Fernandez
Journal:  Nature       Date:  2002-08-29       Impact factor: 49.962

4.  Versatile cloning system for construction of multimeric proteins for use in atomic force microscopy.

Authors:  Annette Steward; José Luis Toca-Herrera; Jane Clarke
Journal:  Protein Sci       Date:  2002-09       Impact factor: 6.725

Review 5.  Mechanical processes in biochemistry.

Authors:  Carlos Bustamante; Yann R Chemla; Nancy R Forde; David Izhaky
Journal:  Annu Rev Biochem       Date:  2004       Impact factor: 23.643

6.  The unfolding kinetics of ubiquitin captured with single-molecule force-clamp techniques.

Authors:  Michael Schlierf; Hongbin Li; Julio M Fernandez
Journal:  Proc Natl Acad Sci U S A       Date:  2004-04-27       Impact factor: 11.205

Review 7.  The cellulosomes: multienzyme machines for degradation of plant cell wall polysaccharides.

Authors:  Edward A Bayer; Jean-Pierre Belaich; Yuval Shoham; Raphael Lamed
Journal:  Annu Rev Microbiol       Date:  2004       Impact factor: 15.500

8.  Structural organization of the intact bacterial cellulosome as revealed by electron microscopy.

Authors:  Mohamed Madkour; Frank Mayer
Journal:  Cell Biol Int       Date:  2003       Impact factor: 3.612

9.  Sequencing of a Clostridium thermocellum gene (cipA) encoding the cellulosomal SL-protein reveals an unusual degree of internal homology.

Authors:  U T Gerngross; M P Romaniec; T Kobayashi; N S Huskisson; A L Demain
Journal:  Mol Microbiol       Date:  1993-04       Impact factor: 3.501

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  41 in total

1.  Spontaneous dimerization of titin protein Z1Z2 domains induces strong nanomechanical anchoring.

Authors:  Sergi Garcia-Manyes; Carmen L Badilla; Jorge Alegre-Cebollada; Yalda Javadi; Julio M Fernández
Journal:  J Biol Chem       Date:  2012-04-21       Impact factor: 5.157

2.  Nanomechanics of the cadherin ectodomain: "canalization" by Ca2+ binding results in a new mechanical element.

Authors:  Javier Oroz; Alejandro Valbuena; Andrés Manuel Vera; Jesús Mendieta; Paulino Gómez-Puertas; Mariano Carrión-Vázquez
Journal:  J Biol Chem       Date:  2010-12-22       Impact factor: 5.157

3.  CnaA domains in bacterial pili are efficient dissipaters of large mechanical shocks.

Authors:  Daniel J Echelman; Jorge Alegre-Cebollada; Carmen L Badilla; Chungyu Chang; Hung Ton-That; Julio M Fernández
Journal:  Proc Natl Acad Sci U S A       Date:  2016-02-16       Impact factor: 11.205

4.  Engineering proteins with enhanced mechanical stability by force-specific sequence motifs.

Authors:  Wenzhe Lu; Surendra S Negi; Andres F Oberhauser; Werner Braun
Journal:  Proteins       Date:  2012-02-10

5.  Mechanical resistance in unstructured proteins.

Authors:  Sigurður Ægir Jónsson; Simon Mitternacht; Anders Irbäck
Journal:  Biophys J       Date:  2013-06-18       Impact factor: 4.033

6.  Conformational plasticity of the essential membrane-associated mannosyltransferase PimA from mycobacteria.

Authors:  David Giganti; Jorge Alegre-Cebollada; Saioa Urresti; David Albesa-Jové; Ane Rodrigo-Unzueta; Natalia Comino; Michael Kachala; Sonia López-Fernández; Dmitri I Svergun; Julio M Fernández; Marcelo E Guerin
Journal:  J Biol Chem       Date:  2013-08-20       Impact factor: 5.157

7.  Enhancing the mechanical stability of proteins through a cocktail approach.

Authors:  Yi Cao; Yongnan Devin Li; Hongbin Li
Journal:  Biophys J       Date:  2011-04-06       Impact factor: 4.033

8.  An intramolecular lock facilitates folding and stabilizes the tertiary structure of Streptococcus mutans adhesin P1.

Authors:  Kyle P Heim; Paula J Crowley; Joanna R Long; Shweta Kailasan; Robert McKenna; L Jeannine Brady
Journal:  Proc Natl Acad Sci U S A       Date:  2014-10-20       Impact factor: 11.205

9.  Mechanical properties of β-catenin revealed by single-molecule experiments.

Authors:  Alejandro Valbuena; Andrés Manuel Vera; Javier Oroz; Margarita Menéndez; Mariano Carrión-Vázquez
Journal:  Biophys J       Date:  2012-10-16       Impact factor: 4.033

10.  Protein unfolding by biological unfoldases: insights from modeling.

Authors:  Michał Wojciechowski; Piotr Szymczak; Mariano Carrión-Vázquez; Marek Cieplak
Journal:  Biophys J       Date:  2014-10-07       Impact factor: 4.033

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