Literature DB >> 12192073

Versatile cloning system for construction of multimeric proteins for use in atomic force microscopy.

Annette Steward1, José Luis Toca-Herrera, Jane Clarke.   

Abstract

This manuscript introduces a versatile system for construction of multimeric proteins to be used as substrates for atomic force microscopy. The construction makes use of a cassette system that allows modules to be cut and ligated in any combination in eight different positions. The modules can be sequenced in situ after construction. A three-module fragment can be produced that is of a size amenable to structural and biophysical analysis to check the effect of placing a protein into a multimeric construct. We show that if the parent titin modules are retained in a construct, they can act both as linkers and as an internal standard for the force measurements. Proteins that cannot be expressed solubly in an eight-module homopolymer have been expressed and subject to force measurements using this system.

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Year:  2002        PMID: 12192073      PMCID: PMC2373599          DOI: 10.1110/ps.0212702

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  8 in total

1.  Atomic force microscopy reveals the mechanical design of a modular protein.

Authors:  H Li; A F Oberhauser; S B Fowler; J Clarke; J M Fernandez
Journal:  Proc Natl Acad Sci U S A       Date:  2000-06-06       Impact factor: 11.205

2.  Mechanical and chemical unfolding of a single protein: a comparison.

Authors:  M Carrion-Vazquez; A F Oberhauser; S B Fowler; P E Marszalek; S E Broedel; J Clarke; J M Fernandez
Journal:  Proc Natl Acad Sci U S A       Date:  1999-03-30       Impact factor: 11.205

3.  Can non-mechanical proteins withstand force? Stretching barnase by atomic force microscopy and molecular dynamics simulation.

Authors:  R B Best; B Li; A Steward; V Daggett; J Clarke
Journal:  Biophys J       Date:  2001-10       Impact factor: 4.033

4.  Mapping the folding pathway of an immunoglobulin domain: structural detail from Phi value analysis and movement of the transition state.

Authors:  S B Fowler; J Clarke
Journal:  Structure       Date:  2001-05-09       Impact factor: 5.006

5.  Single molecule force spectroscopy of spectrin repeats: low unfolding forces in helix bundles.

Authors:  M Rief; J Pascual; M Saraste; H E Gaub
Journal:  J Mol Biol       Date:  1999-02-19       Impact factor: 5.469

6.  The molecular elasticity of the extracellular matrix protein tenascin.

Authors:  A F Oberhauser; P E Marszalek; H P Erickson; J M Fernandez
Journal:  Nature       Date:  1998-05-14       Impact factor: 49.962

7.  Reversible unfolding of individual titin immunoglobulin domains by AFM.

Authors:  M Rief; M Gautel; F Oesterhelt; J M Fernandez; H E Gaub
Journal:  Science       Date:  1997-05-16       Impact factor: 47.728

Review 8.  Over-production of proteins in Escherichia coli: mutant hosts that allow synthesis of some membrane proteins and globular proteins at high levels.

Authors:  B Miroux; J E Walker
Journal:  J Mol Biol       Date:  1996-07-19       Impact factor: 5.469

  8 in total
  48 in total

1.  A simple method for probing the mechanical unfolding pathway of proteins in detail.

Authors:  Robert B Best; Susan B Fowler; Jose L Toca-Herrera; Jane Clarke
Journal:  Proc Natl Acad Sci U S A       Date:  2002-09-06       Impact factor: 11.205

2.  The unfolding kinetics of ubiquitin captured with single-molecule force-clamp techniques.

Authors:  Michael Schlierf; Hongbin Li; Julio M Fernandez
Journal:  Proc Natl Acad Sci U S A       Date:  2004-04-27       Impact factor: 11.205

3.  Mechanical anisotropy of ankyrin repeats.

Authors:  Whasil Lee; Xiancheng Zeng; Kristina Rotolo; Ming Yang; Christopher J Schofield; Vann Bennett; Weitao Yang; Piotr E Marszalek
Journal:  Biophys J       Date:  2012-03-06       Impact factor: 4.033

4.  Mechanical unfolding of an ankyrin repeat protein.

Authors:  David Serquera; Whasil Lee; Giovanni Settanni; Piotr E Marszalek; Emanuele Paci; Laura S Itzhaki
Journal:  Biophys J       Date:  2010-04-07       Impact factor: 4.033

5.  Nanomechanics of the cadherin ectodomain: "canalization" by Ca2+ binding results in a new mechanical element.

Authors:  Javier Oroz; Alejandro Valbuena; Andrés Manuel Vera; Jesús Mendieta; Paulino Gómez-Puertas; Mariano Carrión-Vázquez
Journal:  J Biol Chem       Date:  2010-12-22       Impact factor: 5.157

6.  Full reconstruction of a vectorial protein folding pathway by atomic force microscopy and molecular dynamics simulations.

Authors:  Whasil Lee; Xiancheng Zeng; Huan-Xiang Zhou; Vann Bennett; Weitao Yang; Piotr E Marszalek
Journal:  J Biol Chem       Date:  2010-09-24       Impact factor: 5.157

7.  Engineering proteins with enhanced mechanical stability by force-specific sequence motifs.

Authors:  Wenzhe Lu; Surendra S Negi; Andres F Oberhauser; Werner Braun
Journal:  Proteins       Date:  2012-02-10

8.  Biophysical investigations of engineered polyproteins: implications for force data.

Authors:  Ross W S Rounsevell; Annette Steward; Jane Clarke
Journal:  Biophys J       Date:  2004-12-21       Impact factor: 4.033

9.  Frequency modulation atomic force microscopy reveals individual intermediates associated with each unfolded I27 titin domain.

Authors:  Michael J Higgins; John E Sader; Suzanne P Jarvis
Journal:  Biophys J       Date:  2005-10-28       Impact factor: 4.033

10.  Altered mechanical properties of titin immunoglobulin domain 27 in the presence of calcium.

Authors:  Michael M DuVall; Jessica L Gifford; Matthias Amrein; Walter Herzog
Journal:  Eur Biophys J       Date:  2012-12-07       Impact factor: 1.733

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