Literature DB >> 19663490

Development of a nonlinear classical polarization model for liquid water and aqueous solutions: COS/D.

Anna-Pitschna E Kunz1, Wilfred F van Gunsteren.   

Abstract

A new charge-on-spring (COS) model for water is introduced (COS/D). It includes a sublinear dependence of the induced dipole on the electric field for large field strength to include the effect of hyperpolarizability by damping the polarizability. Only two new parameters were introduced to define the damping of the polarizability. In the parametrization procedure, these two damping parameters, the two Lennard-Jones parameters, the charge on the oxygen, and the distance between the virtual site and the oxygen atom were varied to reproduce the density, the heat of vaporization, the dielectric permittivity, and the position of the first peak in the radial distribution function of liquid water at room temperature and pressure. In this way, a model was obtained that correctly describes a variety of thermodynamic, dynamic, and dielectric properties of water while still preserving the simplicity of the COS model, which allows a straightforward introduction of explicit polarization into (bio)molecular force fields.

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Year:  2009        PMID: 19663490     DOI: 10.1021/jp903164s

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  17 in total

1.  Drude polarizable force field for aliphatic ketones and aldehydes, and their associated acyclic carbohydrates.

Authors:  Meagan C Small; Asaminew H Aytenfisu; Fang-Yu Lin; Xibing He; Alexander D MacKerell
Journal:  J Comput Aided Mol Des       Date:  2017-02-11       Impact factor: 3.686

2.  Force Field for Peptides and Proteins based on the Classical Drude Oscillator.

Authors:  Pedro E M Lopes; Jing Huang; Jihyun Shim; Yun Luo; Hui Li; Benoît Roux; Alexander D Mackerell
Journal:  J Chem Theory Comput       Date:  2013-12-10       Impact factor: 6.006

3.  Polarizable Mean-Field Model of Water for Biological Simulations with Amber and Charmm force fields.

Authors:  Igor V Leontyev; Alexei A Stuchebrukhov
Journal:  J Chem Theory Comput       Date:  2012-09-11       Impact factor: 6.006

4.  Molecular Dynamics Simulations of Ionic Liquids and Electrolytes Using Polarizable Force Fields.

Authors:  Dmitry Bedrov; Jean-Philip Piquemal; Oleg Borodin; Alexander D MacKerell; Benoît Roux; Christian Schröder
Journal:  Chem Rev       Date:  2019-05-29       Impact factor: 60.622

5.  Modeling Electronic Polarizability Changes in the Course of a Magnesium Ion Water Ligand Exchange Process.

Authors:  Igor V Kurnikov; Maria Kurnikova
Journal:  J Phys Chem B       Date:  2015-07-31       Impact factor: 2.991

6.  Implementation of extended Lagrangian dynamics in GROMACS for polarizable simulations using the classical Drude oscillator model.

Authors:  Justin A Lemkul; Benoît Roux; David van der Spoel; Alexander D MacKerell
Journal:  J Comput Chem       Date:  2015-05-12       Impact factor: 3.376

7.  Drude Polarizable Force Field Parametrization of Carboxylate and N-Acetyl Amine Carbohydrate Derivatives.

Authors:  Poonam Pandey; Asaminew H Aytenfisu; Alexander D MacKerell; Sairam S Mallajosyula
Journal:  J Chem Theory Comput       Date:  2019-08-29       Impact factor: 6.006

8.  Development of polarizable models for molecular mechanical calculations. 3. Polarizable water models conforming to Thole polarization screening schemes.

Authors:  Jun Wang; Piotr Cieplak; Qin Cai; Meng-Juei Hsieh; Junmei Wang; Yong Duan; Ray Luo
Journal:  J Phys Chem B       Date:  2012-07-05       Impact factor: 2.991

9.  Force Fields for Small Molecules.

Authors:  Fang-Yu Lin; Alexander D MacKerell
Journal:  Methods Mol Biol       Date:  2019

10.  Force Field for Water Based on Neural Network.

Authors:  Hao Wang; Weitao Yang
Journal:  J Phys Chem Lett       Date:  2018-06-04       Impact factor: 6.475

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