Literature DB >> 29775313

Force Field for Water Based on Neural Network.

Hao Wang1, Weitao Yang2,3.   

Abstract

We developed a novel neural network-based force field for water based on training with high-level ab initio theory. The force field was built based on an electrostatically embedded many-body expansion method truncated at binary interactions. The many-body expansion method is a common strategy to partition the total Hamiltonian of large systems into a hierarchy of few-body terms. Neural networks were trained to represent electrostatically embedded one-body and two-body interactions, which require as input only one and two water molecule calculations at the level of ab initio electronic structure method CCSD/aug-cc-pVDZ embedded in the molecular mechanics water environment, making it efficient as a general force field construction approach. Structural and dynamic properties of liquid water calculated with our force field show good agreement with experimental results. We constructed two sets of neural network based force fields: nonpolarizable and polarizable force fields. Simulation results show that the nonpolarizable force field using fixed TIP3P charges has already behaved well, since polarization effects and many-body effects are implicitly included due to the electrostatic embedding scheme. Our results demonstrate that the electrostatically embedded many-body expansion combined with neural network provides a promising and systematic way to build next-generation force fields at high accuracy and low computational costs, especially for large systems.

Entities:  

Year:  2018        PMID: 29775313      PMCID: PMC6241215          DOI: 10.1021/acs.jpclett.8b01131

Source DB:  PubMed          Journal:  J Phys Chem Lett        ISSN: 1948-7185            Impact factor:   6.475


  48 in total

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Journal:  Phys Rev Lett       Date:  1991-03-18       Impact factor: 9.161

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Authors:  Zhonghua Ma; Mark Tuckerman
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Authors:  David Prendergast; Jeffrey C Grossman; Giulia Galli
Journal:  J Chem Phys       Date:  2005-07-01       Impact factor: 3.488

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Authors:  Aron J Cohen; Paula Mori-Sánchez; Weitao Yang
Journal:  Science       Date:  2008-08-08       Impact factor: 47.728

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Authors:  Mark S Gordon; Dmitri G Fedorov; Spencer R Pruitt; Lyudmila V Slipchenko
Journal:  Chem Rev       Date:  2011-08-26       Impact factor: 60.622

7.  The many-body expansion combined with neural networks.

Authors:  Kun Yao; John E Herr; John Parkhill
Journal:  J Chem Phys       Date:  2017-01-07       Impact factor: 3.488

8.  On the accuracy of the MB-pol many-body potential for water: Interaction energies, vibrational frequencies, and classical thermodynamic and dynamical properties from clusters to liquid water and ice.

Authors:  Sandeep K Reddy; Shelby C Straight; Pushp Bajaj; C Huy Pham; Marc Riera; Daniel R Moberg; Miguel A Morales; Chris Knight; Andreas W Götz; Francesco Paesani
Journal:  J Chem Phys       Date:  2016-11-21       Impact factor: 3.488

9.  The generalized energy-based fragmentation approach with an improved fragmentation scheme: benchmark results and illustrative applications.

Authors:  Shugui Hua; Wei Li; Shuhua Li
Journal:  Chemphyschem       Date:  2012-12-13       Impact factor: 3.102

10.  Computationally efficient characterization of potential energy surfaces based on fingerprint distances.

Authors:  Bastian Schaefer; Stefan Goedecker
Journal:  J Chem Phys       Date:  2016-07-21       Impact factor: 3.488

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  2 in total

1.  Solvation Free Energy Calculations with Quantum Mechanics/Molecular Mechanics and Machine Learning Models.

Authors:  Pan Zhang; Lin Shen; Weitao Yang
Journal:  J Phys Chem B       Date:  2019-01-15       Impact factor: 2.991

2.  Automatically Constructed Neural Network Potentials for Molecular Dynamics Simulation of Zinc Proteins.

Authors:  Mingyuan Xu; Tong Zhu; John Z H Zhang
Journal:  Front Chem       Date:  2021-06-18       Impact factor: 5.221

  2 in total

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