Literature DB >> 19650080

Engineering multigene expression in vitro and in vivo with small terminators for T7 RNA polymerase.

Liping Du1, Rong Gao, Anthony C Forster.   

Abstract

Engineering protein expression in vitro or in vivo is usually straightforward for single genes, but remains challenging for multiple genes because of the requirement of coordinated control. RNA and protein overexpression strategies often exploit T7 RNA polymerase and its natural TPhi Class I terminator. However, this terminator's inefficiency and large size (100 bp) are problematic for multigene construction and expression. Here, we measure the effects of tandem copies of a small (18 bp) Class II T7 terminator from vesicular stomatitis virus on transcription in vitro and on translation in vitro and in vivo. We first test monomeric and dimeric gene constructs, then attempt extension to pentameric gene constructs. "BioBrick" versions of a pET vector and translation factor genes were constructed to facilitate cloning, and His-tags were incorporated to allow copurification of all protein products for relatively unbiased analysis and easy purification. Several results were surprising, including imbalanced expression of the pentameric constructs in vivo, illustrating the value of synthetic biology for investigating gene expression. However, these problems were solved rationally by changing the orders of the genes and by adding extra promoters to the upstream gene or by moving to a more predictable in vitro translation system. These successes were significant, given our initial unexpected results and that we are unaware of another example of coordinated overexpression of five proteins. Our modular, flexible, rational method should further empower synthetic biologists wishing to overexpress multiple proteins simultaneously. 2009 Wiley Periodicals, Inc.

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Year:  2009        PMID: 19650080      PMCID: PMC2783478          DOI: 10.1002/bit.22491

Source DB:  PubMed          Journal:  Biotechnol Bioeng        ISSN: 0006-3592            Impact factor:   4.530


  27 in total

1.  Cell-free translation reconstituted with purified components.

Authors:  Y Shimizu; A Inoue; Y Tomari; T Suzuki; T Yokogawa; K Nishikawa; T Ueda
Journal:  Nat Biotechnol       Date:  2001-08       Impact factor: 54.908

2.  Programming peptidomimetic syntheses by translating genetic codes designed de novo.

Authors:  Anthony C Forster; Zhongping Tan; Madhavi N L Nalam; Hening Lin; Hui Qu; Virginia W Cornish; Stephen C Blacklow
Journal:  Proc Natl Acad Sci U S A       Date:  2003-05-16       Impact factor: 11.205

Review 3.  Synthetic biology projects in vitro.

Authors:  Anthony C Forster; George M Church
Journal:  Genome Res       Date:  2006-12-06       Impact factor: 9.043

Review 4.  The RNA degradosome of Escherichia coli: an mRNA-degrading machine assembled on RNase E.

Authors:  Agamemnon J Carpousis
Journal:  Annu Rev Microbiol       Date:  2007       Impact factor: 15.500

5.  Tuning the expression level of recombinant proteins by modulating mRNA stability in a cell-free protein synthesis system.

Authors:  Jin-Ho Ahn; Taek-Jin Kang; Dong-Myung Kim
Journal:  Biotechnol Bioeng       Date:  2008-10-01       Impact factor: 4.530

6.  Recombinant ferritin: modulation of subunit stoichiometry in bacterial expression systems.

Authors:  P Rucker; F M Torti; S V Torti
Journal:  Protein Eng       Date:  1997-08

7.  Termination and slippage by bacteriophage T7 RNA polymerase.

Authors:  L E Macdonald; Y Zhou; W T McAllister
Journal:  J Mol Biol       Date:  1993-08-20       Impact factor: 5.469

8.  Rescue of rinderpest virus from cloned cDNA.

Authors:  M D Baron; T Barrett
Journal:  J Virol       Date:  1997-02       Impact factor: 5.103

9.  Coexpression of proteins in bacteria using T7-based expression plasmids: expression of heteromeric cell-cycle and transcriptional regulatory complexes.

Authors:  K Johnston; A Clements; R N Venkataramani; R C Trievel; R Marmorstein
Journal:  Protein Expr Purif       Date:  2000-12       Impact factor: 1.650

10.  Regulated processive transcription of chromatin by T7 RNA polymerase in Trypanosoma brucei.

Authors:  E Wirtz; M Hoek; G A Cross
Journal:  Nucleic Acids Res       Date:  1998-10-15       Impact factor: 16.971

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  14 in total

1.  Dissecting limiting factors of the Protein synthesis Using Recombinant Elements (PURE) system.

Authors:  Jun Li; Chi Zhang; Poyi Huang; Erkin Kuru; Eliot T C Forster-Benson; Taibo Li; George M Church
Journal:  Translation (Austin)       Date:  2017-05-09

2.  Multigene expression in vivo: supremacy of large versus small terminators for T7 RNA polymerase.

Authors:  Liping Du; Seth Villarreal; Anthony C Forster
Journal:  Biotechnol Bioeng       Date:  2011-12-01       Impact factor: 4.530

Review 3.  Synthetic in vitro circuits.

Authors:  Adam J Hockenberry; Michael C Jewett
Journal:  Curr Opin Chem Biol       Date:  2012-06-05       Impact factor: 8.822

Review 4.  Update on designing and building minimal cells.

Authors:  Michael C Jewett; Anthony C Forster
Journal:  Curr Opin Biotechnol       Date:  2010-07-16       Impact factor: 9.740

5.  Comparative transcription profiling and in-depth characterization of plasmid-based and plasmid-free Escherichia coli expression systems under production conditions.

Authors:  Juergen Mairhofer; Theresa Scharl; Karoline Marisch; Monika Cserjan-Puschmann; Gerald Striedner
Journal:  Appl Environ Microbiol       Date:  2013-04-12       Impact factor: 4.792

Review 6.  Cell-free protein synthesis: the state of the art.

Authors:  James W Whittaker
Journal:  Biotechnol Lett       Date:  2012-10-21       Impact factor: 2.461

Review 7.  Contextualizing context for synthetic biology--identifying causes of failure of synthetic biological systems.

Authors:  Stefano Cardinale; Adam Paul Arkin
Journal:  Biotechnol J       Date:  2012-05-31       Impact factor: 4.677

8.  Expression optimization and synthetic gene networks in cell-free systems.

Authors:  David K Karig; Sukanya Iyer; Michael L Simpson; Mitchel J Doktycz
Journal:  Nucleic Acids Res       Date:  2011-12-17       Impact factor: 16.971

Review 9.  Toward engineering synthetic microbial metabolism.

Authors:  George H McArthur; Stephen S Fong
Journal:  J Biomed Biotechnol       Date:  2009-12-14

10.  De novo design and synthesis of a 30-cistron translation-factor module.

Authors:  Tyson R Shepherd; Liping Du; Josefine Liljeruhm; Jinfan Wang; Marcus O D Sjödin; Magnus Wetterhall; Tetsuya Yomo; Anthony C Forster
Journal:  Nucleic Acids Res       Date:  2017-10-13       Impact factor: 16.971

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