Literature DB >> 19643076

Flavin-dependent thymidylate synthase: a novel pathway towards thymine.

Eric M Koehn1, Amnon Kohen.   

Abstract

For several decades only one chemical pathway was known for the de novo biosynthesis of the essential DNA nucleotide, thymidylate. This reaction catalyzed by thyA or TYMS encoded thymidylate synthases is the last committed step in the biosynthesis of thymidylate and proceeds via the reductive methylation of uridylate. However, many microorganisms have recently been shown to produce a novel, flavin-dependent thymidylate synthase encoded by the thyX gene. Preliminary structural and mechanistic studies have shown substantial differences between these deoxyuridylate-methylating enzymes. Recently, both the chemical and kinetic mechanisms of FDTS have provided further insight into the distinctions between thyA and thyX encoded thymidylate synthases. Since FDTSs are found in several severe human pathogens their unusual mechanism offers a promising future for the development of antibiotic and antiviral drugs with little effect on human thymidylate biosynthesis. Copyright 2009 Elsevier Inc. All rights reserved.

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Year:  2009        PMID: 19643076      PMCID: PMC2812616          DOI: 10.1016/j.abb.2009.07.016

Source DB:  PubMed          Journal:  Arch Biochem Biophys        ISSN: 0003-9861            Impact factor:   4.013


  38 in total

1.  An alternative flavin-dependent mechanism for thymidylate synthesis.

Authors:  Hannu Myllykallio; Gerard Lipowski; Damien Leduc; Jonathan Filee; Patrick Forterre; Ursula Liebl
Journal:  Science       Date:  2002-05-23       Impact factor: 47.728

2.  Biochemistry. DNA building block reinvented.

Authors:  Alexey G Murzin
Journal:  Science       Date:  2002-05-23       Impact factor: 47.728

3.  Functional analysis of substrate and cofactor complex structures of a thymidylate synthase-complementing protein.

Authors:  Irimpan I Mathews; Ashley M Deacon; Jaume M Canaves; Daniel McMullan; Scott A Lesley; Sanjay Agarwalla; Peter Kuhn
Journal:  Structure       Date:  2003-06       Impact factor: 5.006

4.  Life without dihydrofolate reductase FolA.

Authors:  Hannu Myllykallio; Damien Leduc; Jonathan Filee; Ursula Liebl
Journal:  Trends Microbiol       Date:  2003-05       Impact factor: 17.079

Review 5.  Lessons and conclusions from dissecting the mechanism of a bisubstrate enzyme: thymidylate synthase mutagenesis, function, and structure.

Authors:  Janet S Finer-Moore; Daniel V Santi; Robert M Stroud
Journal:  Biochemistry       Date:  2003-01-21       Impact factor: 3.162

6.  Crystal structure of thy1, a thymidylate synthase complementing protein from Thermotoga maritima at 2.25 A resolution.

Authors:  Peter Kuhn; Scott A Lesley; Irimpan I Mathews; Jaume M Canaves; Linda S Brinen; Xiaoping Dai; Ashley M Deacon; Marc A Elsliger; Said Eshaghi; Ross Floyd; Adam Godzik; Carina Grittini; Slawomir K Grzechnik; Chittibabu Guda; Keith O Hodgson; Lukasz Jaroszewski; Cathy Karlak; Heath E Klock; Eric Koesema; John M Kovarik; Andreas T Kreusch; Daniel McMullan; Timothy M McPhillips; Mark A Miller; Mitchell Miller; Andrew Morse; Kin Moy; Jie Ouyang; Alyssa Robb; Kevin Rodrigues; Thomas L Selby; Glen Spraggon; Raymond C Stevens; Susan S Taylor; Henry van den Bedem; Jeff Velasquez; Juli Vincent; Xianhong Wang; Bill West; Guenter Wolf; John Wooley; Ian A Wilson
Journal:  Proteins       Date:  2002-10-01

7.  Kinetic characterization of bifunctional thymidylate synthase-dihydrofolate reductase (TS-DHFR) from Cryptosporidium hominis: a paradigm shift for ts activity and channeling behavior.

Authors:  Chloé E Atreya; Karen S Anderson
Journal:  J Biol Chem       Date:  2004-02-12       Impact factor: 5.157

Review 8.  Two distinct pathways for thymidylate (dTMP) synthesis in (hyper)thermophilic Bacteria and Archaea.

Authors:  D Leduc; S Graziani; L Meslet-Cladiere; A Sodolescu; U Liebl; H Myllykallio
Journal:  Biochem Soc Trans       Date:  2004-04       Impact factor: 5.407

9.  Mechanistic characterization of Toxoplasma gondii thymidylate synthase (TS-DHFR)-dihydrofolate reductase. Evidence for a TS intermediate and TS half-sites reactivity.

Authors:  Eric F Johnson; Wolfgang Hinz; Chloe E Atreya; Frank Maley; Karen S Anderson
Journal:  J Biol Chem       Date:  2002-08-20       Impact factor: 5.157

10.  Structural genomics of the Thermotoga maritima proteome implemented in a high-throughput structure determination pipeline.

Authors:  Scott A Lesley; Peter Kuhn; Adam Godzik; Ashley M Deacon; Irimpan Mathews; Andreas Kreusch; Glen Spraggon; Heath E Klock; Daniel McMullan; Tanya Shin; Juli Vincent; Alyssa Robb; Linda S Brinen; Mitchell D Miller; Timothy M McPhillips; Mark A Miller; Daniel Scheibe; Jaume M Canaves; Chittibabu Guda; Lukasz Jaroszewski; Thomas L Selby; Marc-Andre Elsliger; John Wooley; Susan S Taylor; Keith O Hodgson; Ian A Wilson; Peter G Schultz; Raymond C Stevens
Journal:  Proc Natl Acad Sci U S A       Date:  2002-08-22       Impact factor: 11.205

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  11 in total

1.  Trapping of an intermediate in the reaction catalyzed by flavin-dependent thymidylate synthase.

Authors:  Tatiana V Mishanina; Eric M Koehn; John A Conrad; Bruce A Palfey; Scott A Lesley; Amnon Kohen
Journal:  J Am Chem Soc       Date:  2012-02-24       Impact factor: 15.419

2.  RNA methylation by radical SAM enzymes RlmN and Cfr proceeds via methylene transfer and hydride shift.

Authors:  Feng Yan; Danica Galonic Fujimori
Journal:  Proc Natl Acad Sci U S A       Date:  2011-02-22       Impact factor: 11.205

3.  Bacillus halodurans Strain C125 Encodes and Synthesizes Enzymes from Both Known Pathways To Form dUMP Directly from Cytosine Deoxyribonucleotides.

Authors:  Christian Berg Oehlenschlæger; Monika Nøhr Løvgreen; Eva Reinauer; Emilia Lehtinen; Marie-Louise Lindberg Pind; Pernille Harris; Jan Martinussen; Martin Willemoës
Journal:  Appl Environ Microbiol       Date:  2015-03-06       Impact factor: 4.792

Review 4.  Flavin-dependent thymidylate synthase: N5 of flavin as a Methylene carrier.

Authors:  Kalani Karunaratne; Nicholas Luedtke; Daniel M Quinn; Amnon Kohen
Journal:  Arch Biochem Biophys       Date:  2017-08-15       Impact factor: 4.013

5.  Folate binding site of flavin-dependent thymidylate synthase.

Authors:  Eric M Koehn; Laura L Perissinotti; Salah Moghram; Arjun Prabhakar; Scott A Lesley; Irimpan I Mathews; Amnon Kohen
Journal:  Proc Natl Acad Sci U S A       Date:  2012-09-10       Impact factor: 11.205

Review 6.  Mechanisms and inhibition of uracil methylating enzymes.

Authors:  Tatiana V Mishanina; Eric M Koehn; Amnon Kohen
Journal:  Bioorg Chem       Date:  2011-11-27       Impact factor: 5.275

7.  Deprotonations in the Reaction of Flavin-Dependent Thymidylate Synthase.

Authors:  Frederick W Stull; Steffen M Bernard; Aparna Sapra; Janet L Smith; Erik R P Zuiderweg; Bruce A Palfey
Journal:  Biochemistry       Date:  2016-06-02       Impact factor: 3.162

8.  Newly identified HMO-2011-type phages reveal genomic diversity and biogeographic distributions of this marine viral group.

Authors:  Fang Qin; Sen Du; Zefeng Zhang; Hanqi Ying; Ying Wu; Guiyuan Zhao; Mingyu Yang; Yanlin Zhao
Journal:  ISME J       Date:  2022-01-12       Impact factor: 11.217

9.  Computational Identification of Druggable Bioactive Compounds from Catharanthus roseus and Avicennia marina against Colorectal Cancer by Targeting Thymidylate Synthase.

Authors:  Md Rashedul Islam; Md Abdul Awal; Ahmed Khames; Mohammad A S Abourehab; Abdus Samad; Walid M I Hassan; Rahat Alam; Osman I Osman; Suza Mohammad Nur; Mohammad Habibur Rahman Molla; Abdulrasheed O Abdulrahman; Sultana Rajia; Foysal Ahammad; Md Nazmul Hasan; Ishtiaq Qadri; Bonglee Kim
Journal:  Molecules       Date:  2022-03-24       Impact factor: 4.411

Review 10.  Flavin-Dependent Thymidylate Synthase as a New Antibiotic Target.

Authors:  Michael Choi; Kalani Karunaratne; Amnon Kohen
Journal:  Molecules       Date:  2016-05-20       Impact factor: 4.411

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