Literature DB >> 22172597

Mechanisms and inhibition of uracil methylating enzymes.

Tatiana V Mishanina1, Eric M Koehn, Amnon Kohen.   

Abstract

Uracil methylation is essential for survival of organisms and passage of information from generation to generation with high fidelity. Two alternative uridyl methylation enzymes, flavin-dependent thymidylate synthase and folate/FAD-dependent RNA methyltransferase, have joined the long-known classical enzymes, thymidylate synthase and SAM-dependent RNA methyltransferase. These alternative enzymes differ significantly from their classical counterparts in structure, cofactor requirements and chemical mechanism. This review covers the available structural and mechanistic knowledge of the classical and alternative enzymes in biological uracil methylation, and offers a possibility of using inhibitors specifically aiming at microbial thymidylate production as antimicrobial drugs.
Copyright © 2011 Elsevier Inc. All rights reserved.

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Year:  2011        PMID: 22172597      PMCID: PMC3315608          DOI: 10.1016/j.bioorg.2011.11.005

Source DB:  PubMed          Journal:  Bioorg Chem        ISSN: 0045-2068            Impact factor:   5.275


  47 in total

1.  Characterization of the 23 S ribosomal RNA m5U1939 methyltransferase from Escherichia coli.

Authors:  Sanjay Agarwalla; James T Kealey; Daniel V Santi; Robert M Stroud
Journal:  J Biol Chem       Date:  2002-01-04       Impact factor: 5.157

2.  An alternative flavin-dependent mechanism for thymidylate synthesis.

Authors:  Hannu Myllykallio; Gerard Lipowski; Damien Leduc; Jonathan Filee; Patrick Forterre; Ursula Liebl
Journal:  Science       Date:  2002-05-23       Impact factor: 47.728

3.  Biochemistry. DNA building block reinvented.

Authors:  Alexey G Murzin
Journal:  Science       Date:  2002-05-23       Impact factor: 47.728

4.  Crystal structure and enzymatic characterization of thymidylate synthase X from Helicobacter pylori strain SS1.

Authors:  Kuifeng Wang; Qi Wang; Jing Chen; Lili Chen; Hualiang Jiang; Xu Shen
Journal:  Protein Sci       Date:  2011-07-06       Impact factor: 6.725

5.  Crystal structure of thy1, a thymidylate synthase complementing protein from Thermotoga maritima at 2.25 A resolution.

Authors:  Peter Kuhn; Scott A Lesley; Irimpan I Mathews; Jaume M Canaves; Linda S Brinen; Xiaoping Dai; Ashley M Deacon; Marc A Elsliger; Said Eshaghi; Ross Floyd; Adam Godzik; Carina Grittini; Slawomir K Grzechnik; Chittibabu Guda; Keith O Hodgson; Lukasz Jaroszewski; Cathy Karlak; Heath E Klock; Eric Koesema; John M Kovarik; Andreas T Kreusch; Daniel McMullan; Timothy M McPhillips; Mark A Miller; Mitchell Miller; Andrew Morse; Kin Moy; Jie Ouyang; Alyssa Robb; Kevin Rodrigues; Thomas L Selby; Glen Spraggon; Raymond C Stevens; Susan S Taylor; Henry van den Bedem; Jeff Velasquez; Juli Vincent; Xianhong Wang; Bill West; Guenter Wolf; John Wooley; Ian A Wilson
Journal:  Proteins       Date:  2002-10-01

Review 6.  In vitro detection of the enzymatic activity of folate-dependent tRNA (Uracil-54,-C5)-methyltransferase: evolutionary implications.

Authors:  Jaunius Urbonavicius; Céline Brochier-Armanet; Stéphane Skouloubris; Hannu Myllykallio; Henri Grosjean
Journal:  Methods Enzymol       Date:  2007       Impact factor: 1.600

7.  Catalytic mechanism and structure of viral flavin-dependent thymidylate synthase ThyX.

Authors:  Sébastien Graziani; Julie Bernauer; Stéphane Skouloubris; Marc Graille; Cong-Zhao Zhou; Christophe Marchand; Paulette Decottignies; Herman van Tilbeurgh; Hannu Myllykallio; Ursula Liebl
Journal:  J Biol Chem       Date:  2006-05-17       Impact factor: 5.157

8.  Role of Y94 in proton and hydride transfers catalyzed by thymidylate synthase.

Authors:  Baoyu Hong; Frank Maley; Amnon Kohen
Journal:  Biochemistry       Date:  2007-11-14       Impact factor: 3.162

9.  Functional analysis of the Mycobacterium tuberculosis FAD-dependent thymidylate synthase, ThyX, reveals new amino acid residues contributing to an extended ThyX motif.

Authors:  Jonathan E Ulmer; Yap Boum; Christopher D Thouvenel; Hannu Myllykallio; Carol Hopkins Sibley
Journal:  J Bacteriol       Date:  2008-01-11       Impact factor: 3.490

10.  Structural genomics of the Thermotoga maritima proteome implemented in a high-throughput structure determination pipeline.

Authors:  Scott A Lesley; Peter Kuhn; Adam Godzik; Ashley M Deacon; Irimpan Mathews; Andreas Kreusch; Glen Spraggon; Heath E Klock; Daniel McMullan; Tanya Shin; Juli Vincent; Alyssa Robb; Linda S Brinen; Mitchell D Miller; Timothy M McPhillips; Mark A Miller; Daniel Scheibe; Jaume M Canaves; Chittibabu Guda; Lukasz Jaroszewski; Thomas L Selby; Marc-Andre Elsliger; John Wooley; Susan S Taylor; Keith O Hodgson; Ian A Wilson; Peter G Schultz; Raymond C Stevens
Journal:  Proc Natl Acad Sci U S A       Date:  2002-08-22       Impact factor: 11.205

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  9 in total

Review 1.  Flavin-dependent thymidylate synthase: N5 of flavin as a Methylene carrier.

Authors:  Kalani Karunaratne; Nicholas Luedtke; Daniel M Quinn; Amnon Kohen
Journal:  Arch Biochem Biophys       Date:  2017-08-15       Impact factor: 4.013

2.  Synthesis and application of isotopically labeled flavin nucleotides.

Authors:  Tatiana V Mishanina; Amnon Kohen
Journal:  J Labelled Comp Radiopharm       Date:  2015-07-07       Impact factor: 1.921

3.  Folate binding site of flavin-dependent thymidylate synthase.

Authors:  Eric M Koehn; Laura L Perissinotti; Salah Moghram; Arjun Prabhakar; Scott A Lesley; Irimpan I Mathews; Amnon Kohen
Journal:  Proc Natl Acad Sci U S A       Date:  2012-09-10       Impact factor: 11.205

4.  Chemo-enzymatic synthesis of the exocyclic olefin isomer of thymidine monophosphate.

Authors:  Dibyendu Mondal; Eric M Koehn; Jiajun Yao; David F Wiemer; Amnon Kohen
Journal:  Bioorg Med Chem       Date:  2018-03-22       Impact factor: 3.641

5.  C-H methylation of heteroarenes inspired by radical SAM methyl transferase.

Authors:  Jinghan Gui; Qianghui Zhou; Chung-Mao Pan; Yuki Yabe; Aaron C Burns; Michael R Collins; Martha A Ornelas; Yoshihiro Ishihara; Phil S Baran
Journal:  J Am Chem Soc       Date:  2014-03-21       Impact factor: 15.419

6.  Substrate activation in flavin-dependent thymidylate synthase.

Authors:  Tatiana V Mishanina; John M Corcoran; Amnon Kohen
Journal:  J Am Chem Soc       Date:  2014-07-18       Impact factor: 15.419

7.  Methyl Metabolism and the Clock: An Ancient Story With New Perspectives.

Authors:  Jean-Michel Fustin
Journal:  J Biol Rhythms       Date:  2022-04-05       Impact factor: 3.649

8.  Mechanistic and structural basis for inhibition of thymidylate synthase ThyX.

Authors:  Tamara Basta; Yap Boum; Julien Briffotaux; Hubert F Becker; Isabelle Lamarre-Jouenne; Jean-Christophe Lambry; Stephane Skouloubris; Ursula Liebl; Marc Graille; Herman van Tilbeurgh; Hannu Myllykallio
Journal:  Open Biol       Date:  2012-10       Impact factor: 6.411

Review 9.  Reviving the RNA World: An Insight into the Appearance of RNA Methyltransferases.

Authors:  Ajay K Rana; Serge Ankri
Journal:  Front Genet       Date:  2016-06-06       Impact factor: 4.599

  9 in total

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