Literature DB >> 19639312

Solution NMR mapping of water-accessible residues in the transmembrane beta-barrel of OmpX.

Laurent J Catoire1, Manuela Zoonens, Carine van Heijenoort, Fabrice Giusti, Eric Guittet, Jean-Luc Popot.   

Abstract

The atomic structure of OmpX, the smallest member of the bacterial outer membrane protein family, has been previously established by X-ray crystallography and NMR spectroscopy. In apparent conflict with electrophysiological studies, the lumen of its transmembrane beta-barrel appears too tightly packed with amino acid side chains to let any solute flow through. In the present study, high-resolution solution NMR spectra were obtained of OmpX kept water-soluble by either amphipol A8-35 or the detergent dihexanoylphosphatidylcholine. Hydrogen/deuterium exchange measurements performed after prolonged equilibration show that, whatever the surfactant used, some of the amide protons of the membrane-spanning region exchange much more readily than others, which likely reflects the dynamics of the barrel.

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Year:  2009        PMID: 19639312     DOI: 10.1007/s00249-009-0513-2

Source DB:  PubMed          Journal:  Eur Biophys J        ISSN: 0175-7571            Impact factor:   1.733


  26 in total

1.  Gene duplication of the eight-stranded beta-barrel OmpX produces a functional pore: a scenario for the evolution of transmembrane beta-barrels.

Authors:  Thomas Arnold; Melissa Poynor; Stephan Nussberger; Andrei N Lupas; Dirk Linke
Journal:  J Mol Biol       Date:  2006-12-16       Impact factor: 5.469

2.  Well-defined nanoparticles formed by hydrophobic assembly of a short and polydisperse random terpolymer, amphipol A8-35.

Authors:  Yann Gohon; Fabrice Giusti; Carla Prata; Delphine Charvolin; Peter Timmins; Christine Ebel; Christophe Tribet; Jean-Luc Popot
Journal:  Langmuir       Date:  2006-01-31       Impact factor: 3.882

3.  Effective rotational correlation times of proteins from NMR relaxation interference.

Authors:  Donghan Lee; Christian Hilty; Gerhard Wider; Kurt Wüthrich
Journal:  J Magn Reson       Date:  2005-09-26       Impact factor: 2.229

4.  NMR study of a membrane protein in detergent-free aqueous solution.

Authors:  Manuela Zoonens; Laurent J Catoire; Fabrice Giusti; Jean-Luc Popot
Journal:  Proc Natl Acad Sci U S A       Date:  2005-06-14       Impact factor: 11.205

5.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

Review 6.  Amphipols: polymeric surfactants for membrane biology research.

Authors:  J-L Popot; E A Berry; D Charvolin; C Creuzenet; C Ebel; D M Engelman; M Flötenmeyer; F Giusti; Y Gohon; Q Hong; J H Lakey; K Leonard; H A Shuman; P Timmins; D E Warschawski; F Zito; M Zoonens; B Pucci; C Tribet
Journal:  Cell Mol Life Sci       Date:  2003-08       Impact factor: 9.261

7.  Glucose-based amphiphilic telomers designed to keep membrane proteins soluble in aqueous solutions: synthesis and physicochemical characterization.

Authors:  K Shivaji Sharma; Grégory Durand; Fabrice Giusti; Blandine Olivier; Anne-Sylvie Fabiano; Paola Bazzacco; Tassadite Dahmane; Christine Ebel; Jean-Luc Popot; Bernard Pucci
Journal:  Langmuir       Date:  2008-12-02       Impact factor: 3.882

8.  Transmembrane passage of hydrophobic compounds through a protein channel wall.

Authors:  Elizabeth M Hearn; Dimki R Patel; Bryan W Lepore; Mridhu Indic; Bert van den Berg
Journal:  Nature       Date:  2009-02-01       Impact factor: 49.962

9.  Enterobacter aerogenes OmpX, a cation-selective channel mar- and osmo-regulated.

Authors:  Myrielle Dupont; Emmanuelle Dé; Renaud Chollet; Jacqueline Chevalier; Jean-Marie Pagès
Journal:  FEBS Lett       Date:  2004-07-02       Impact factor: 4.124

10.  Outer membrane proteins: comparing X-ray and NMR structures by MD simulations in lipid bilayers.

Authors:  Katherine Cox; Peter J Bond; Alessandro Grottesi; Marc Baaden; Mark S P Sansom
Journal:  Eur Biophys J       Date:  2007-06-06       Impact factor: 1.733

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  21 in total

1.  Synthesis, characterization and applications of a perdeuterated amphipol.

Authors:  Fabrice Giusti; Jutta Rieger; Laurent J Catoire; Shuo Qian; Antonio N Calabrese; Thomas G Watkinson; Marina Casiraghi; Sheena E Radford; Alison E Ashcroft; Jean-Luc Popot
Journal:  J Membr Biol       Date:  2014-03-21       Impact factor: 1.843

2.  Amphipol-mediated screening of molecular orthoses specific for membrane protein targets.

Authors:  Yann Ferrandez; Manuela Dezi; Mickael Bosco; Agathe Urvoas; Marie Valerio-Lepiniec; Christel Le Bon; Fabrice Giusti; Isabelle Broutin; Grégory Durand; Ange Polidori; Jean-Luc Popot; Martin Picard; Philippe Minard
Journal:  J Membr Biol       Date:  2014-08-03       Impact factor: 1.843

3.  Solution behavior and crystallization of cytochrome bc₁ in the presence of amphipols.

Authors:  Delphine Charvolin; Martin Picard; Li-Shar Huang; Edward A Berry; Jean-Luc Popot
Journal:  J Membr Biol       Date:  2014-06-19       Impact factor: 1.843

4.  The use of amphipols for solution NMR studies of membrane proteins: advantages and constraints as compared to other solubilizing media.

Authors:  Noelya Planchard; Élodie Point; Tassadite Dahmane; Fabrice Giusti; Marie Renault; Christel Le Bon; Grégory Durand; Alain Milon; Éric Guittet; Manuela Zoonens; Jean-Luc Popot; Laurent J Catoire
Journal:  J Membr Biol       Date:  2014-03-28       Impact factor: 1.843

Review 5.  Labeling and functionalizing amphipols for biological applications.

Authors:  Christel Le Bon; Jean-Luc Popot; Fabrice Giusti
Journal:  J Membr Biol       Date:  2014-04-03       Impact factor: 1.843

Review 6.  Nonmicellar systems for solution NMR spectroscopy of membrane proteins.

Authors:  Thomas Raschle; Sebastian Hiller; Manuel Etzkorn; Gerhard Wagner
Journal:  Curr Opin Struct Biol       Date:  2010-08       Impact factor: 6.809

7.  Increased immunoaccessibility of MOMP epitopes in a vaccine formulated with amphipols may account for the very robust protection elicited against a vaginal challenge with Chlamydia muridarum.

Authors:  Delia F Tifrea; Sukumar Pal; Jean-Luc Popot; Melanie J Cocco; Luis M de la Maza
Journal:  J Immunol       Date:  2014-04-28       Impact factor: 5.422

8.  Molecular dynamics simulations of a membrane protein/amphipol complex.

Authors:  Jason D Perlmutter; Jean-Luc Popot; Jonathan N Sachs
Journal:  J Membr Biol       Date:  2014-06-15       Impact factor: 1.843

Review 9.  Amphipols for each season.

Authors:  Manuela Zoonens; Jean-Luc Popot
Journal:  J Membr Biol       Date:  2014-06-27       Impact factor: 1.843

10.  Folding and stability of outer membrane protein A (OmpA) from Escherichia coli in an amphipathic polymer, amphipol A8-35.

Authors:  Cosmin L Pocanschi; Jean-Luc Popot; Jörg H Kleinschmidt
Journal:  Eur Biophys J       Date:  2013-02-01       Impact factor: 1.733

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