Literature DB >> 19631767

DNA polymerase family X: function, structure, and cellular roles.

Jennifer Yamtich1, Joann B Sweasy.   

Abstract

The X family of DNA polymerases in eukaryotic cells consists of terminal transferase and DNA polymerases beta, lambda, and mu. These enzymes have similar structural portraits, yet different biochemical properties, especially in their interactions with DNA. None of these enzymes possesses a proofreading subdomain, and their intrinsic fidelity of DNA synthesis is much lower than that of a polymerase that functions in cellular DNA replication. In this review, we discuss the similarities and differences of three members of Family X: polymerases beta, lambda, and mu. We focus on biochemical mechanisms, structural variation, fidelity and lesion bypass mechanisms, and cellular roles. Remarkably, although these enzymes have similar three-dimensional structures, their biochemical properties and cellular functions differ in important ways that impact cellular function. Copyright (c) 2010 Elsevier B.V. All rights reserved.

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Year:  2009        PMID: 19631767      PMCID: PMC2846199          DOI: 10.1016/j.bbapap.2009.07.008

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  177 in total

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Authors:  Michael R Lieber
Journal:  J Biol Chem       Date:  2007-11-12       Impact factor: 5.157

2.  Ionizing radiation sensitivity of DNA polymerase lambda-deficient cells.

Authors:  Christie Vermeulen; Barbara Bertocci; Adrian C Begg; Conchita Vens
Journal:  Radiat Res       Date:  2007-12       Impact factor: 2.841

Review 3.  The X family portrait: structural insights into biological functions of X family polymerases.

Authors:  Andrea F Moon; Miguel Garcia-Diaz; Vinod K Batra; William A Beard; Katarzyna Bebenek; Thomas A Kunkel; Samuel H Wilson; Lars C Pedersen
Journal:  DNA Repair (Amst)       Date:  2007-07-12

4.  Structure/function analysis of the interaction of adenomatous polyposis coli with DNA polymerase beta and its implications for base excision repair.

Authors:  Ramesh Balusu; Aruna S Jaiswal; Melissa L Armas; Chanakya N Kundu; Linda B Bloom; Satya Narayan
Journal:  Biochemistry       Date:  2007-11-14       Impact factor: 3.162

5.  Role of the catalytic metal during polymerization by DNA polymerase lambda.

Authors:  Miguel Garcia-Diaz; Katarzyna Bebenek; Joseph M Krahn; Lars C Pedersen; Thomas A Kunkel
Journal:  DNA Repair (Amst)       Date:  2007-05-01

6.  HMGB1 is a cofactor in mammalian base excision repair.

Authors:  Rajendra Prasad; Yuan Liu; Leesa J Deterding; Vladimir P Poltoratsky; Padmini S Kedar; Julie K Horton; Shin-Ichiro Kanno; Kenjiro Asagoshi; Esther W Hou; Svetlana N Khodyreva; Olga I Lavrik; Kenneth B Tomer; Akira Yasui; Samuel H Wilson
Journal:  Mol Cell       Date:  2007-09-07       Impact factor: 17.970

7.  Human DNA polymerase lambda is a proficient extender of primer ends paired to 7,8-dihydro-8-oxoguanine.

Authors:  Angel J Picher; Luis Blanco
Journal:  DNA Repair (Amst)       Date:  2007-08-07

8.  Overexpression of DNA polymerase beta results in an increased rate of frameshift mutations during base excision repair.

Authors:  Katie Chan; Sue Houlbrook; Qiu-Mei Zhang; Mark Harrison; Ian D Hickson; Grigory L Dianov
Journal:  Mutagenesis       Date:  2007-01-31       Impact factor: 3.000

9.  Loop II of DNA polymerase beta is important for polymerization activity and fidelity.

Authors:  George C Lin; Joachim Jaeger; Joann B Sweasy
Journal:  Nucleic Acids Res       Date:  2007-04-16       Impact factor: 16.971

10.  Error-free bypass of 2-hydroxyadenine by human DNA polymerase lambda with Proliferating Cell Nuclear Antigen and Replication Protein A in different sequence contexts.

Authors:  Emmanuele Crespan; Ulrich Hübscher; Giovanni Maga
Journal:  Nucleic Acids Res       Date:  2007-07-30       Impact factor: 16.971

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  64 in total

1.  Presteady state kinetic investigation of the incorporation of anti-hepatitis B nucleotide analogues catalyzed by noncanonical human DNA polymerases.

Authors:  Jessica A Brown; Lindsey R Pack; Jason D Fowler; Zucai Suo
Journal:  Chem Res Toxicol       Date:  2011-12-16       Impact factor: 3.739

2.  The adaptive significance of unproductive alternative splicing in primates.

Authors:  Adonis Skandalis; Mark Frampton; Jon Seger; Miriam H Richards
Journal:  RNA       Date:  2010-08-18       Impact factor: 4.942

3.  Pre-steady-state kinetic analysis of the incorporation of anti-HIV nucleotide analogs catalyzed by human X- and Y-family DNA polymerases.

Authors:  Jessica A Brown; Lindsey R Pack; Jason D Fowler; Zucai Suo
Journal:  Antimicrob Agents Chemother       Date:  2010-11-15       Impact factor: 5.191

Review 4.  DNA-PK: a dynamic enzyme in a versatile DSB repair pathway.

Authors:  Anthony J Davis; Benjamin P C Chen; David J Chen
Journal:  DNA Repair (Amst)       Date:  2014-03-27

5.  Functional analyses of polymorphic variants of human terminal deoxynucleotidyl transferase.

Authors:  A Troshchynsky; I Dzneladze; L Chen; Y Sheng; V Saridakis; G E Wu
Journal:  Genes Immun       Date:  2015-06-04       Impact factor: 2.676

6.  Fluorescence resonance energy transfer studies of DNA polymerase β: the critical role of fingers domain movements and a novel non-covalent step during nucleotide selection.

Authors:  Jamie B Towle-Weicksel; Shibani Dalal; Christal D Sohl; Sylvie Doublié; Karen S Anderson; Joann B Sweasy
Journal:  J Biol Chem       Date:  2014-04-24       Impact factor: 5.157

7.  Comparative Genomics of Chrysochromulina Ericina Virus and Other Microalga-Infecting Large DNA Viruses Highlights Their Intricate Evolutionary Relationship with the Established Mimiviridae Family.

Authors:  Lucie Gallot-Lavallée; Guillaume Blanc; Jean-Michel Claverie
Journal:  J Virol       Date:  2017-06-26       Impact factor: 5.103

8.  Substrate-dependent millisecond domain motions in DNA polymerase β.

Authors:  Rebecca B Berlow; Monalisa Swain; Shibani Dalal; Joann B Sweasy; J Patrick Loria
Journal:  J Mol Biol       Date:  2012-03-23       Impact factor: 5.469

9.  Coordinated processing of 3' slipped (CAG)n/(CTG)n hairpins by DNA polymerases β and δ preferentially induces repeat expansions.

Authors:  Nelson L S Chan; Jinzhen Guo; Tianyi Zhang; Guogen Mao; Caixia Hou; Fenghua Yuan; Jian Huang; Yanbin Zhang; Jianxin Wu; Liya Gu; Guo-Min Li
Journal:  J Biol Chem       Date:  2013-04-12       Impact factor: 5.157

10.  Estrogen Drives Cellular Transformation and Mutagenesis in Cells Expressing the Breast Cancer-Associated R438W DNA Polymerase Lambda Protein.

Authors:  Antonia A Nemec; Korie B Bush; Jamie B Towle-Weicksel; B Frazier Taylor; Vincent Schulz; Joanne B Weidhaas; David P Tuck; Joann B Sweasy
Journal:  Mol Cancer Res       Date:  2016-09-12       Impact factor: 5.852

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