Literature DB >> 19617550

Sequence-independent and reversible photocontrol of transcription/expression systems using a photosensitive nucleic acid binder.

André Estévez-Torres1, Cécile Crozatier, Antoine Diguet, Tomoaki Hara, Hirohide Saito, Kenichi Yoshikawa, Damien Baigl.   

Abstract

To understand non-trivial biological functions, it is crucial to develop minimal synthetic models that capture their basic features. Here, we demonstrate a sequence-independent, reversible control of transcription and gene expression using a photosensitive nucleic acid binder (pNAB). By introducing a pNAB whose affinity for nucleic acids is tuned by light, in vitro RNA production, EGFP translation, and GFP expression (a set of reactions including both transcription and translation) were successfully inhibited in the dark and recovered after a short illumination at 365 nm. Our results indicate that the accessibility of the protein machinery to one or several nucleic acid binding sites can be efficiently regulated by changing the conformational/condensation state of the nucleic acid (DNA conformation or mRNA aggregation), thus regulating gene activity in an efficient, reversible, and sequence-independent manner. The possibility offered by our approach to use light to trigger various gene expression systems in a system-independent way opens interesting perspectives to study gene expression dynamics as well as to develop photocontrolled biotechnological procedures.

Mesh:

Substances:

Year:  2009        PMID: 19617550      PMCID: PMC2718349          DOI: 10.1073/pnas.0904382106

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  24 in total

1.  Large discrete transition in a single DNA molecule appears continuous in the ensemble.

Authors: 
Journal:  Phys Rev Lett       Date:  1996-04-15       Impact factor: 9.161

2.  Cell-free translation reconstituted with purified components.

Authors:  Y Shimizu; A Inoue; Y Tomari; T Suzuki; T Yokogawa; K Nishikawa; T Ueda
Journal:  Nat Biotechnol       Date:  2001-08       Impact factor: 54.908

3.  Giant DNA molecules exhibit on/off switching of transcriptional activity through conformational transition.

Authors:  Kanta Tsumoto; François Luckel; Kenichi Yoshikawa
Journal:  Biophys Chem       Date:  2003-10-01       Impact factor: 2.352

Review 4.  The role of nucleoid-associated proteins in the organization and compaction of bacterial chromatin.

Authors:  Remus T Dame
Journal:  Mol Microbiol       Date:  2005-05       Impact factor: 3.501

5.  Photoreversible DNA condensation using light-responsive surfactants.

Authors:  Anne-Laure M Le Ny; C Ted Lee
Journal:  J Am Chem Soc       Date:  2006-05-17       Impact factor: 15.419

Review 6.  Network motifs: theory and experimental approaches.

Authors:  Uri Alon
Journal:  Nat Rev Genet       Date:  2007-06       Impact factor: 53.242

7.  Mechanism of chromosome compaction and looping by the Escherichia coli nucleoid protein Fis.

Authors:  Dunja Skoko; Daniel Yoo; Hua Bai; Bernhard Schnurr; Jie Yan; Sarah M McLeod; John F Marko; Reid C Johnson
Journal:  J Mol Biol       Date:  2006-09-22       Impact factor: 5.469

8.  Counterion-induced condesation of deoxyribonucleic acid. a light-scattering study.

Authors:  R W Wilson; V A Bloomfield
Journal:  Biochemistry       Date:  1979-05-29       Impact factor: 3.162

9.  Intrinsic termination of T7 RNA polymerase mediated by either RNA or DNA.

Authors:  L Hartvig; J Christiansen
Journal:  EMBO J       Date:  1996-09-02       Impact factor: 11.598

10.  Folding transition into a loosely collapsed state in plasmid DNA as revealed by single-molecule observation.

Authors:  Yuko T Sato; Tsutomu Hamada; Koji Kubo; Ayako Yamada; Tsunao Kishida; Osam Mazda; Kenichi Yoshikawa
Journal:  FEBS Lett       Date:  2005-06-06       Impact factor: 4.124

View more
  11 in total

1.  DNA condensation in one dimension.

Authors:  Günther Pardatscher; Dan Bracha; Shirley S Daube; Ohad Vonshak; Friedrich C Simmel; Roy H Bar-Ziv
Journal:  Nat Nanotechnol       Date:  2016-08-08       Impact factor: 39.213

2.  Functional Surface-immobilization of Genes Using Multistep Strand Displacement Lithography.

Authors:  Günther Pardatscher; Matthaeus Schwarz-Schilling; Sandra Sagredo; Friedrich C Simmel
Journal:  J Vis Exp       Date:  2018-10-25       Impact factor: 1.355

3.  Longer DNA exhibits greater potential for cell-free gene expression.

Authors:  Takashi Nishio; Yuko Yoshikawa; Kenichi Yoshikawa; Shin-Ichi Sato
Journal:  Sci Rep       Date:  2021-06-03       Impact factor: 4.379

4.  UV-induced bursting of cell-sized multicomponent lipid vesicles in a photosensitive surfactant solution.

Authors:  Antoine Diguet; Miho Yanagisawa; Yan-Jun Liu; Elodie Brun; Sacha Abadie; Sergii Rudiuk; Damien Baigl
Journal:  J Am Chem Soc       Date:  2012-02-28       Impact factor: 15.419

5.  Light-activated communication in synthetic tissues.

Authors:  Michael J Booth; Vanessa Restrepo Schild; Alexander D Graham; Sam N Olof; Hagan Bayley
Journal:  Sci Adv       Date:  2016-04-01       Impact factor: 14.136

6.  Light-patterning of synthetic tissues with single droplet resolution.

Authors:  Michael J Booth; Vanessa Restrepo Schild; Stuart J Box; Hagan Bayley
Journal:  Sci Rep       Date:  2017-08-24       Impact factor: 4.379

7.  DNA Interaction with Head-to-Tail Associates of Cationic Surfactants Prevents Formation of Compact Particles.

Authors:  Nina Kasyanenko; Ivan Unksov; Vladimir Bakulev; Svetlana Santer
Journal:  Molecules       Date:  2018-06-28       Impact factor: 4.411

8.  Area Increase and Budding in Giant Vesicles Triggered by Light: Behind the Scene.

Authors:  Vasil N Georgiev; Andrea Grafmüller; David Bléger; Stefan Hecht; Sonja Kunstmann; Stefanie Barbirz; Reinhard Lipowsky; Rumiana Dimova
Journal:  Adv Sci (Weinh)       Date:  2018-06-05       Impact factor: 16.806

9.  Photochromic switching of the DNA helicity induced by azobenzene derivatives.

Authors:  Marco Deiana; Ziemowit Pokladek; Joanna Olesiak-Banska; Piotr Młynarz; Marek Samoc; Katarzyna Matczyszyn
Journal:  Sci Rep       Date:  2016-06-24       Impact factor: 4.379

Review 10.  Controlling gene expression with light: a multidisciplinary endeavour.

Authors:  Denis Hartmann; Jefferson M Smith; Giacomo Mazzotti; Razia Chowdhry; Michael J Booth
Journal:  Biochem Soc Trans       Date:  2020-08-28       Impact factor: 5.407

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.