Literature DB >> 15907841

Folding transition into a loosely collapsed state in plasmid DNA as revealed by single-molecule observation.

Yuko T Sato1, Tsutomu Hamada, Koji Kubo, Ayako Yamada, Tsunao Kishida, Osam Mazda, Kenichi Yoshikawa.   

Abstract

The conformational transition of a plasmid DNA, pGEG.GL3 (12.5 kbp, circular), induced by spermine(4+) was studied through the observation of individual DNA by fluorescence microscopy. We deduced the change in the hydrodynamic radius R(H) from an analysis of the Brownian motion of single DNA molecules. R(H) decreases in a continuous manner with an increase in spermine(4+), in contrast to the large discrete on/off change for long linear DNA. Just after the transition to the collapsed state, a small number of DNA molecules tend to form an assembly, which disperses in the bulk solution without precipitation.

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Year:  2005        PMID: 15907841     DOI: 10.1016/j.febslet.2005.04.072

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  5 in total

1.  On mechanism of intermediate-sized circular DNA compaction mediated by spermine: contribution of fluorescence lifetime correlation spectroscopy.

Authors:  Jana Humpolícková; Miroslav Stepánek; Teresa Kral; Ales Benda; Karel Procházka; Martin Hof
Journal:  J Fluoresc       Date:  2008-02-15       Impact factor: 2.217

2.  Structural change of DNA induced by nucleoid proteins: growth phase-specific Fis and stationary phase-specific Dps.

Authors:  Yuko T Sato; Shun Watanabe; Takahiro Kenmotsu; Masatoshi Ichikawa; Yuko Yoshikawa; Jun Teramoto; Tadayuki Imanaka; Akira Ishihama; Kenichi Yoshikawa
Journal:  Biophys J       Date:  2013-08-20       Impact factor: 4.033

3.  Sequence-independent and reversible photocontrol of transcription/expression systems using a photosensitive nucleic acid binder.

Authors:  André Estévez-Torres; Cécile Crozatier; Antoine Diguet; Tomoaki Hara; Hirohide Saito; Kenichi Yoshikawa; Damien Baigl
Journal:  Proc Natl Acad Sci U S A       Date:  2009-07-14       Impact factor: 11.205

4.  Loosening of DNA/polycation complexes by synthetic polyampholyte to improve the transcription efficiency: effect of charge balance in the polyampholyte.

Authors:  Chieko Yoshihara; Chwen-Yang Shew; Tomoko Ito; Yoshiyuki Koyama
Journal:  Biophys J       Date:  2010-04-07       Impact factor: 4.033

5.  DNA Folding Transition in Presence of Naphthylhydroxamic Acids as Revealed by Fluorescence Microscopic Single Molecule Observation Method.

Authors:  Priyanka Singh; Rama Pande
Journal:  J Fluoresc       Date:  2016-01       Impact factor: 2.217

  5 in total

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