Literature DB >> 19605680

Quantitative epigenetics: DNA sequence variation need not apply.

Eric J Richards1.   

Abstract

Two recent reports, including one by Reinders and colleagues (pp. 939-950) in the April 15, 2009, issue of Genes & Development, describe the construction of Arabidopsis recombinant inbred populations that maximize epigenetic rather than genetic variation. The distribution and behavior of phenotypic variation in these populations suggest that stable epialleles can control complex quantitative traits. However, stochastic epimutation and transposon movement in these populations present some unexpected technical hurdles to implementing quantitative epigenetic analysis.

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Year:  2009        PMID： 19605680      PMCID： PMC3959989          DOI： 10.1101/gad.1824909

Source DB:  PubMed          Journal:  Genes Dev        ISSN： 0890-9369            Impact factor:   11.361


  33 in total

1.  Ectopic hypermethylation of flower-specific genes in Arabidopsis.

Authors:  S E Jacobsen; H Sakai; E J Finnegan; X Cao; E M Meyerowitz
Journal:  Curr Biol       Date:  2000-02-24       Impact factor: 10.834

2.  Quantitative epigenetics.

Authors:  Suzanne L Rutherford; Steven Henikoff
Journal:  Nat Genet       Date:  2003-01       Impact factor: 38.330

3.  Erasure of CpG methylation in Arabidopsis alters patterns of histone H3 methylation in heterochromatin.

Authors:  Muhammad Tariq; Hidetoshi Saze; Aline V Probst; Jacek Lichota; Yoshiki Habu; Jerzy Paszkowski
Journal:  Proc Natl Acad Sci U S A       Date:  2003-07-09       Impact factor: 11.205

4.  Role of CG and non-CG methylation in immobilization of transposons in Arabidopsis.

Authors:  Masaomi Kato; Asuka Miura; Judith Bender; Steven E Jacobsen; Tetsuji Kakutani
Journal:  Curr Biol       Date:  2003-03-04       Impact factor: 10.834

5.  Arabidopsis MET1 cytosine methyltransferase mutants.

Authors:  Mark W Kankel; Douglas E Ramsey; Trevor L Stokes; Susan K Flowers; Jeremy R Haag; Jeffrey A Jeddeloh; Nicole C Riddle; Michelle L Verbsky; Eric J Richards
Journal:  Genetics       Date:  2003-03       Impact factor: 4.562

6.  Maintenance of CpG methylation is essential for epigenetic inheritance during plant gametogenesis.

Authors:  Hidetoshi Saze; Ortrun Mittelsten Scheid; Jerzy Paszkowski
Journal:  Nat Genet       Date:  2003-05       Impact factor: 38.330

7.  The control of natural variation in cytosine methylation in Arabidopsis.

Authors:  Nicole C Riddle; Eric J Richards
Journal:  Genetics       Date:  2002-09       Impact factor: 4.562

8.  Role of transposable elements in heterochromatin and epigenetic control.

Authors:  Zachary Lippman; Anne-Valérie Gendrel; Michael Black; Matthew W Vaughn; Neilay Dedhia; W Richard McCombie; Kimberly Lavine; Vivek Mittal; Bruce May; Kristin D Kasschau; James C Carrington; Rebecca W Doerge; Vincent Colot; Rob Martienssen
Journal:  Nature       Date:  2004-07-22       Impact factor: 49.962

9.  Evidence for an epigenetic mechanism by which Hsp90 acts as a capacitor for morphological evolution.

Authors:  Vincent Sollars; Xiangyi Lu; Li Xiao; Xiaoyan Wang; Mark D Garfinkel; Douglas M Ruden
Journal:  Nat Genet       Date:  2002-12-16       Impact factor: 41.307

10.  Assessing the impact of transgenerational epigenetic variation on complex traits.

Authors:  Frank Johannes; Emmanuelle Porcher; Felipe K Teixeira; Vera Saliba-Colombani; Matthieu Simon; Nicolas Agier; Agnès Bulski; Juliette Albuisson; Fabiana Heredia; Pascal Audigier; David Bouchez; Christine Dillmann; Philippe Guerche; Frédéric Hospital; Vincent Colot
Journal:  PLoS Genet       Date:  2009-06-26       Impact factor: 5.917
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  14 in total

1.  The evolution of epitype.

Authors:  Richard B Meagher
Journal:  Plant Cell       Date:  2010-06-15       Impact factor: 11.277

2.  Inbreeding effects in the epigenetic era.

Authors:  Christian Biémont
Journal:  Nat Rev Genet       Date:  2010-01-27       Impact factor: 53.242

3.  Concerning epigenetics and inbreeding.

Authors:  Frank Johannes; Maria Colomé-Tatché
Journal:  Nat Rev Genet       Date:  2011-03-22       Impact factor: 53.242

4.  Features of the Arabidopsis recombination landscape resulting from the combined loss of sequence variation and DNA methylation.

Authors:  Maria Colomé-Tatché; Sandra Cortijo; René Wardenaar; Lionel Morgado; Benoit Lahouze; Alexis Sarazin; Mathilde Etcheverry; Antoine Martin; Suhua Feng; Evelyne Duvernois-Berthet; Karine Labadie; Patrick Wincker; Steven E Jacobsen; Ritsert C Jansen; Vincent Colot; Frank Johannes
Journal:  Proc Natl Acad Sci U S A       Date:  2012-09-17       Impact factor: 11.205

5.  A case-control design for testing and estimating epigenetic effects on complex diseases.

Authors:  Yihan Sui; Weimiao Wu; Zhong Wang; Jianxin Wang; Zuoheng Wang; Rongling Wu
Journal:  Brief Bioinform       Date:  2013-01-17       Impact factor: 11.622

6.  Covering your bases: inheritance of DNA methylation in plant genomes.

Authors:  Chad E Niederhuth; Robert J Schmitz
Journal:  Mol Plant       Date:  2013-11-22       Impact factor: 13.164

7.  The influence of DNA sequence on epigenome-induced pathologies.

Authors:  Richard B Meagher; Kristofer J Müssar
Journal:  Epigenetics Chromatin       Date:  2012-07-20       Impact factor: 4.954

8.  Quantitative epigenetics through epigenomic perturbation of isogenic lines.

Authors:  Frank Johannes; Maria Colomé-Tatché
Journal:  Genetics       Date:  2011-03-08       Impact factor: 4.562

9.  Adaptive transgenerational plasticity in plants: case studies, mechanisms, and implications for natural populations.

Authors:  Jacob J Herman; Sonia E Sultan
Journal:  Front Plant Sci       Date:  2011-12-27       Impact factor: 5.753

10.  A quantitative genetic and epigenetic model of complex traits.

Authors:  Zhong Wang; Zuoheng Wang; Jianxin Wang; Yihan Sui; Jian Zhang; Duanping Liao; Rongling Wu
Journal:  BMC Bioinformatics       Date:  2012-10-26       Impact factor: 3.169
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