Literature DB >> 12853574

Erasure of CpG methylation in Arabidopsis alters patterns of histone H3 methylation in heterochromatin.

Muhammad Tariq1, Hidetoshi Saze, Aline V Probst, Jacek Lichota, Yoshiki Habu, Jerzy Paszkowski.   

Abstract

In mammals and plants, formation of heterochromatin is associated with hypermethylation of DNA at CpG sites and histone H3 methylation at lysine 9. Previous studies have revealed that maintenance of DNA methylation in Neurospora and Arabidopsis requires histone H3 methylation. A feedback loop from DNA methylation to histone methylation, however, is less understood. Its recent examination in Arabidopsis with a partial loss of function in DNA methyltransferase 1 (responsible for maintenance of CpG methylation) yielded conflicting results. Here we report that complete removal of CpG methylation in an Arabidopsis mutant null for DNA maintenance methyltransferase results in a clear loss of histone H3 methylation at lysine 9 in heterochromatin and also at heterochromatic loci that remain transcriptionally silent. Surprisingly, these dramatic alterations are not reflected in heterochromatin relaxation.

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Year:  2003        PMID: 12853574      PMCID: PMC166397          DOI: 10.1073/pnas.1432939100

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  31 in total

Review 1.  DNA methylation patterns and epigenetic memory.

Authors:  Adrian Bird
Journal:  Genes Dev       Date:  2002-01-01       Impact factor: 11.361

Review 2.  Translating the histone code.

Authors:  T Jenuwein; C D Allis
Journal:  Science       Date:  2001-08-10       Impact factor: 47.728

3.  Two Arabidopsis methylation-deficiency mutations confer only partial effects on a methylated endogenous gene family.

Authors:  L Bartee; J Bender
Journal:  Nucleic Acids Res       Date:  2001-05-15       Impact factor: 16.971

4.  A histone H3 methyltransferase controls DNA methylation in Neurospora crassa.

Authors:  H Tamaru; E U Selker
Journal:  Nature       Date:  2001-11-15       Impact factor: 49.962

5.  Dynamic analysis of proviral induction and De Novo methylation: implications for a histone deacetylase-independent, methylation density-dependent mechanism of transcriptional repression.

Authors:  M C Lorincz; D Schübeler; S C Goeke; M Walters; M Groudine; D I Martin
Journal:  Mol Cell Biol       Date:  2000-02       Impact factor: 4.272

6.  Reduced DNA methylation in Arabidopsis thaliana results in abnormal plant development.

Authors:  E J Finnegan; W J Peacock; E S Dennis
Journal:  Proc Natl Acad Sci U S A       Date:  1996-08-06       Impact factor: 11.205

7.  Reversal of methylation-mediated repression with short-chain fatty acids: evidence for an additional mechanism to histone deacetylation.

Authors:  D Benjamin; J P Jost
Journal:  Nucleic Acids Res       Date:  2001-09-01       Impact factor: 16.971

8.  dim-2 encodes a DNA methyltransferase responsible for all known cytosine methylation in Neurospora.

Authors:  E Kouzminova; E U Selker
Journal:  EMBO J       Date:  2001-08-01       Impact factor: 11.598

9.  Requirement of CHROMOMETHYLASE3 for maintenance of CpXpG methylation.

Authors:  A M Lindroth; X Cao; J P Jackson; D Zilberman; C M McCallum; S Henikoff; S E Jacobsen
Journal:  Science       Date:  2001-05-10       Impact factor: 47.728

10.  Control of CpNpG DNA methylation by the KRYPTONITE histone H3 methyltransferase.

Authors:  James P Jackson; Anders M Lindroth; Xiaofeng Cao; Steven E Jacobsen
Journal:  Nature       Date:  2002-03-17       Impact factor: 49.962

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  111 in total

1.  Partitioning of the maize epigenome by the number of methyl groups on histone H3 lysines 9 and 27.

Authors:  Jinghua Shi; R Kelly Dawe
Journal:  Genetics       Date:  2006-04-19       Impact factor: 4.562

Review 2.  Imprinting and seed development.

Authors:  Mary Gehring; Yeonhee Choi; Robert L Fischer
Journal:  Plant Cell       Date:  2004-03-09       Impact factor: 11.277

3.  DNA methylation and demethylation in Arabidopsis.

Authors:  Mary Gehring; Steven Henikoff
Journal:  Arabidopsis Book       Date:  2008-05-23

4.  Loss of DNA methylation affects the recombination landscape in Arabidopsis.

Authors:  Marie Mirouze; Michal Lieberman-Lazarovich; Riccardo Aversano; Etienne Bucher; Joël Nicolet; Jon Reinders; Jerzy Paszkowski
Journal:  Proc Natl Acad Sci U S A       Date:  2012-03-26       Impact factor: 11.205

Review 5.  Epigenetic mechanisms in developmental programming of adult disease.

Authors:  Man Chen; Lubo Zhang
Journal:  Drug Discov Today       Date:  2011-09-16       Impact factor: 7.851

Review 6.  RNA-directed DNA methylation: mechanisms and functions.

Authors:  Magdy M Mahfouz
Journal:  Plant Signal Behav       Date:  2010-07-01

7.  Pairing of lacO tandem repeats in Arabidopsis thaliana nuclei requires the presence of hypermethylated, large arrays at two chromosomal positions, but does not depend on H3-lysine-9-dimethylation.

Authors:  Gabriele Jovtchev; Branimira Emilova Borisova; Markus Kuhlmann; Jörg Fuchs; Koichi Watanabe; Ingo Schubert; Michael Florian Mette
Journal:  Chromosoma       Date:  2011-08-10       Impact factor: 4.316

Review 8.  DNA methylation pathways and their crosstalk with histone methylation.

Authors:  Jiamu Du; Lianna M Johnson; Steven E Jacobsen; Dinshaw J Patel
Journal:  Nat Rev Mol Cell Biol       Date:  2015-09       Impact factor: 94.444

9.  Dedifferentiation of tobacco cells is associated with ribosomal RNA gene hypomethylation, increased transcription, and chromatin alterations.

Authors:  Blazena Koukalova; Miloslava Fojtova; Kar Yoong Lim; Jaroslav Fulnecek; Andrew Rowland Leitch; Ales Kovarik
Journal:  Plant Physiol       Date:  2005-08-19       Impact factor: 8.340

10.  Dynamic landscapes of four histone modifications during deetiolation in Arabidopsis.

Authors:  Jean-Benoit F Charron; Hang He; Axel A Elling; Xing Wang Deng
Journal:  Plant Cell       Date:  2009-12-11       Impact factor: 11.277

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