Literature DB >> 19603754

Similar energetic contributions of packing in the core of membrane and water-soluble proteins.

Nathan H Joh1, Amit Oberai, Duan Yang, Julian P Whitelegge, James U Bowie.   

Abstract

A major driving force for water-soluble protein folding is the hydrophobic effect, but membrane proteins cannot make use of this stabilizing contribution in the apolar core of the bilayer. It has been proposed that membrane proteins compensate by packing more efficiently. We therefore investigated packing contributions experimentally by observing the energetic and structural consequences of cavity creating mutations in the core of a membrane protein. We observed little difference in the packing energetics of water and membrane soluble proteins. Our results imply that other mechanisms are employed to stabilize the structure of membrane proteins.

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Year:  2009        PMID: 19603754      PMCID: PMC2744480          DOI: 10.1021/ja904711k

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  19 in total

1.  Side chains in transmembrane helices are shorter at helix-helix interfaces.

Authors:  S Jiang; I A Vakser
Journal:  Proteins       Date:  2000-08-15

2.  Internal packing of helical membrane proteins.

Authors:  M Eilers; S C Shekar; T Shieh; S O Smith; P J Fleming
Journal:  Proc Natl Acad Sci U S A       Date:  2000-05-23       Impact factor: 11.205

3.  Computation and mutagenesis suggest a right-handed structure for the synaptobrevin transmembrane dimer.

Authors:  K G Fleming; D M Engelman
Journal:  Proteins       Date:  2001-12-01

4.  Helix-helix packing and interfacial pairwise interactions of residues in membrane proteins.

Authors:  L Adamian; J Liang
Journal:  J Mol Biol       Date:  2001-08-24       Impact factor: 5.469

Review 5.  Helical membrane protein folding, stability, and evolution.

Authors:  J L Popot; D M Engelman
Journal:  Annu Rev Biochem       Date:  2000       Impact factor: 23.643

6.  Interhelical hydrogen bonding drives strong interactions in membrane proteins.

Authors:  F X Zhou; M J Cocco; W P Russ; A T Brunger; D M Engelman
Journal:  Nat Struct Biol       Date:  2000-02

7.  Side-chain contributions to membrane protein structure and stability.

Authors:  Salem Faham; Duan Yang; Emiko Bare; Sarah Yohannan; Julian P Whitelegge; James U Bowie
Journal:  J Mol Biol       Date:  2004-01-02       Impact factor: 5.469

8.  Deciphering the message in protein sequences: tolerance to amino acid substitutions.

Authors:  J U Bowie; J F Reidhaar-Olson; W A Lim; R T Sauer
Journal:  Science       Date:  1990-03-16       Impact factor: 47.728

9.  Polar residues drive association of polyleucine transmembrane helices.

Authors:  F X Zhou; H J Merianos; A T Brunger; D M Engelman
Journal:  Proc Natl Acad Sci U S A       Date:  2001-02-13       Impact factor: 11.205

10.  Modest stabilization by most hydrogen-bonded side-chain interactions in membrane proteins.

Authors:  Nathan Hyunjoong Joh; Andrew Min; Salem Faham; Julian P Whitelegge; Duan Yang; Virgil L Woods; James U Bowie
Journal:  Nature       Date:  2008-05-25       Impact factor: 49.962

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  36 in total

1.  Constructing and validating initial Cα models from subnanometer resolution density maps with pathwalking.

Authors:  Mariah R Baker; Ian Rees; Steven J Ludtke; Wah Chiu; Matthew L Baker
Journal:  Structure       Date:  2012-03-07       Impact factor: 5.006

2.  How much do van der Waals dispersion forces contribute to molecular recognition in solution?

Authors:  Lixu Yang; Catherine Adam; Gary S Nichol; Scott L Cockroft
Journal:  Nat Chem       Date:  2013-10-20       Impact factor: 24.427

Review 3.  Lessons from the lysozyme of phage T4.

Authors:  Walter A Baase; Lijun Liu; Dale E Tronrud; Brian W Matthews
Journal:  Protein Sci       Date:  2010-04       Impact factor: 6.725

Review 4.  Protein folding in membranes.

Authors:  Sebastian Fiedler; Jana Broecker; Sandro Keller
Journal:  Cell Mol Life Sci       Date:  2010-01-27       Impact factor: 9.261

5.  Thermodynamic stability of bacteriorhodopsin mutants measured relative to the bacterioopsin unfolded state.

Authors:  Zheng Cao; Jonathan P Schlebach; Chiwook Park; James U Bowie
Journal:  Biochim Biophys Acta       Date:  2011-08-22

Review 6.  Marginally hydrophobic transmembrane α-helices shaping membrane protein folding.

Authors:  Minttu T De Marothy; Arne Elofsson
Journal:  Protein Sci       Date:  2015-05-30       Impact factor: 6.725

Review 7.  Design of self-assembling transmembrane helical bundles to elucidate principles required for membrane protein folding and ion transport.

Authors:  Nathan H Joh; Gevorg Grigoryan; Yibing Wu; William F DeGrado
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2017-08-05       Impact factor: 6.237

8.  Packing of apolar side chains enables accurate design of highly stable membrane proteins.

Authors:  Marco Mravic; Jessica L Thomaston; Maxwell Tucker; Paige E Solomon; Lijun Liu; William F DeGrado
Journal:  Science       Date:  2019-03-29       Impact factor: 47.728

9.  Structural differences between thermophilic and mesophilic membrane proteins.

Authors:  Alejandro D Meruelo; Seong Kyu Han; Sanguk Kim; James U Bowie
Journal:  Protein Sci       Date:  2012-11       Impact factor: 6.725

Review 10.  Forces stabilizing proteins.

Authors:  C Nick Pace; J Martin Scholtz; Gerald R Grimsley
Journal:  FEBS Lett       Date:  2014-05-17       Impact factor: 4.124

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