| Literature DB >> 19587774 |
Ursel M E Schütte1, Zaid Abdo, Stephen J Bent, Christopher J Williams, G Maria Schneider, Bjørn Solheim, Larry J Forney.
Abstract
Succession is defined as changes in biological communities over time. It has been extensively studied in plant communities, but little is known about bacterial succession, in particular in environments such as High Arctic glacier forelands. Bacteria carry out key processes in the development of soil, biogeochemical cycling and facilitating plant colonization. In this study we sampled two roughly parallel chronosequences in the foreland of Midre Lovén glacier on Svalbard, Norway and tested whether any of several factors were associated with changes in the structure of bacterial communities, including time after glacier retreat, horizontal variation caused by the distance between chronosequences and vertical variation at two soil depths. The structures of soil bacterial communities at different locations were compared using terminal restriction fragment length polymorphisms of 16S rRNA genes, and the data were analyzed by sequential analysis of log-linear statistical models. Although no significant differences in community structure were detected between the two chronosequences, statistically significant differences between sampling locations in the surface and mineral soils could be demonstrated even though glacier forelands are patchy and dynamic environments. These findings suggest that bacterial succession occurs in High Arctic glacier forelands but may differ in different soil depths.Entities:
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Year: 2009 PMID: 19587774 PMCID: PMC2764841 DOI: 10.1038/ismej.2009.71
Source DB: PubMed Journal: ISME J ISSN: 1751-7362 Impact factor: 10.302
Contingency table generated based on the community types identified using clustering analysis (shown in Figure.1).
| Group | |||||
|---|---|---|---|---|---|
| Time (y) | Chronosequence | Depth | 1 | 2 | 3 |
| 5 | A | Surface | 0 | 4 | 1 |
| Mineral soil | 5 | 0 | 0 | ||
| B | Surface | 0 | 5 | 0 | |
| Mineral soil | 3 | 0 | 0 | ||
| 19 | A | Surface | 0 | 5 | 0 |
| Mineral soil | 5 | 0 | 0 | ||
| B | Surface | 0 | 4 | 0 | |
| Mineral soil | 5 | 0 | 0 | ||
| 40 | A | Surface | 4 | 1 | 0 |
| Mineral soil | 5 | 0 | 0 | ||
| B | Surface | 4 | 1 | 0 | |
| Mineral soil | 5 | 0 | 0 | ||
| 63 | A | Surface | 5 | 0 | 0 |
| Mineral soil | 5 | 0 | 0 | ||
| B | Surface | 5 | 0 | 0 | |
| Mineral soil | 5 | 0 | 0 | ||
| 100 | A | Surface | 3 | 2 | 0 |
| Mineral soil | 5 | 0 | 0 | ||
| B | Surface | 5 | 0 | 0 | |
| Mineral soil | 5 | 0 | 0 | ||
| 150 | A | Surface | 4 | 1 | 0 |
| Mineral soil | 5 | 0 | 0 | ||
| B | Surface | 5 | 0 | 0 | |
| Mineral soil | 5 | 0 | 0 | ||
Figure 1Hierarchical clustering of bacterial communities from times since glacier retreat, chronosequences, and soil depths, based on data from T-RFLP analysis of 16S rRNA genes. Cluster analysis was done using average linkage based on Euclidean distances using the standardized dataset, and groups (clusters) were determined by Cubic Clustering Criterion (CCC), Pseudo F, and Pseudo Hotelling T2 (see Abdo et al., 2006). These groups are designated by a “G” followed by a number. Five samples were taken from each combination of time of exposure since glacier retreat (5-150 y), chronosequences (A and B), and soil depth [(surface layer (S) and mineral soil sample (M)]. Three samples (19BS and two from 5BM) were excluded from the analysis because no T-RFLP profile could be obtained.
Step-wise model selection using likelihood ratio testing to determine whether the effect of time since glacier retreat, distance between chronosequences, and soil depth on the bacterial community structure was significant.
| Model | Null Model | Likelihood ratio | p- value |
|---|---|---|---|
| Time-alone | Simple-null | 35.59 | < 0.0001 |
| Chronosequence-alone | 1.713 | 0.417 | |
| Depth-alone | 39.01 | < 0.0001 | |
| Time-chronosequence | Time alone | 6.27 | 0.460 |
| Time-depth | 58.45 | < | |
| Time-chronosequence depth | Time –depth | 6.27 | 0.266 |
Level of significance: 0.05/3 = 0.008 using Bonferroni adjustment.
Time -depth model fits the data best.
Akaike's Information Criterion (AIC) scores for the models tested.
| Model tested | AIC score |
|---|---|
| Simple-null model | 131.05 |
| Time -alone | 115.47 |
| Chronosequence-alone | 133.34 |
| Depth-alone | 96.04 |
| Time -chronosequence | 133.19 |
| Time -depth | 81.02 |
| Depth-chronosequence | 102.02 |
| Time -chronosequence-depth | 122.75 |
Minimum AIC score, therefore time-depth model best fits the data.
Figure 2Hierarchical clustering of bacterial communities from surface and mineral soils sampled from the two chronosequences as described in Figure 1. The distinct clusters (groups) identified are designated by a “G” followed by a number. Five samples were taken from each combination of time of exposure since glacier retreat (5-150 y) and chronosequence (A and B). Three samples (19BS and two from 5BM) were excluded from the analysis because no T-RFLP profile could be obtained.
Pairwise comparison of microbial community structures among sites.
| Comparison (y) | Surface layer | Mineral soil | ||
|---|---|---|---|---|
| - 2 log likelihood ratio test statistic | p-value | - 2 log likelihood ratio test statistic | p-value | |
| 5 vs 19 | 4.39 | 0.15 | 0.28 | 0.62 |
| 5 vs 40 | 24.95 | < | 14.15 | 0.003 |
| 5 vs 63 | 27.73 | < | 14.15 | |
| 5 vs 100 | 23.91 | < | 16.41 | |
| 5 vs 150 | 24.95 | < | 29.72 | < |
| 19 vs 40 | 23.51 | < | 13.86 | 0.001 |
| 19 vs 63 | 26.29 | < | 13.86 | |
| 19 vs 100 | 22.47 | < | 17.14 | < |
| 19 vs 150 | 23.51 | < | 33.65 | < |
| 40 vs 63 | 1.44 | 0.11 | 5.49 | 0.10 |
| 40 vs 100 | 0.4 | 0.46 | 4.78 | 0.14 |
| 40 vs 150 | 18.45 | < | 33.65 | < |
| 63 vs 100 | 3 | 0.04 | 1.18 | 0.58 |
| 63 vs 150 | 21.02 | < | 33.65 | < |
| 100 vs 150 | 17.62 | < | 33.65 | < |
Level of significance: 0.05/15 = 0.0033 using Bonferroni adjustment; significant p-values are printed in bold.