Literature DB >> 19586028

Protein hydration dynamics and molecular mechanism of coupled water-protein fluctuations.

Luyuan Zhang1, Yi Yang, Ya-Ting Kao, Lijuan Wang, Dongping Zhong.   

Abstract

Protein surface hydration is fundamental to its structural stability and flexibility, and water-protein fluctuations are essential to biological function. Here, we report a systematic global mapping of water motions in the hydration layer around a model protein of apomyoglobin in both native and molten globule states. With site-directed mutagenesis, we use intrinsic tryptophan as a local optical probe to scan the protein surface one at a time with single-site specificity. With femtosecond resolution, we examined 16 mutants in two states and observed two types of water-network relaxation with distinct energy and time distributions. The first water motion results from the local collective hydrogen-bond network relaxation and occurs in a few picoseconds. The initial hindered motions, observed in bulk water in femtoseconds, are highly suppressed and drastically slow down due to structured water-network collectivity in the layer. The second water-network relaxation unambiguously results from the lateral cooperative rearrangements in the inner hydration shell and occurs in tens to hundreds of picoseconds. Significantly, this longtime dynamics is the coupled interfacial water-protein motions and is the direct measurement of such cooperative fluctuations. These local protein motions, although highly constrained, are necessary to assist the longtime water-network relaxation. A series of correlations of hydrating water dynamics and coupled fluctuations with local protein's chemical and structural properties were observed. These results are significant and reveal various water behaviors in the hydration layer with wide heterogeneity. We defined a solvation speed and an angular speed to quantify the water-network rigidity and local protein flexibility, respectively. We also observed that the dynamic hydration layer extends to more than 10 A. Finally, from native to molten globule states, the hydration water networks loosen up, and the protein locally becomes more flexible with larger global plasticity and partial unfolding.

Entities:  

Mesh:

Substances:

Year:  2009        PMID: 19586028     DOI: 10.1021/ja902918p

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  44 in total

Review 1.  Dynamics and mechanisms of DNA repair by photolyase.

Authors:  Zheyun Liu; Lijuan Wang; Dongping Zhong
Journal:  Phys Chem Chem Phys       Date:  2015-05-14       Impact factor: 3.676

2.  Solvation in protein (un)folding of melittin tetramer-monomer transition.

Authors:  Christina M Othon; Oh-Hoon Kwon; Milo M Lin; Ahmed H Zewail
Journal:  Proc Natl Acad Sci U S A       Date:  2009-07-21       Impact factor: 11.205

3.  Ultrafast solvation dynamics at binding and active sites of photolyases.

Authors:  Chih-Wei Chang; Lijun Guo; Ya-Ting Kao; Jiang Li; Chuang Tan; Tanping Li; Chaitanya Saxena; Zheyun Liu; Lijuan Wang; Aziz Sancar; Dongping Zhong
Journal:  Proc Natl Acad Sci U S A       Date:  2010-01-26       Impact factor: 11.205

4.  Long-range protein-water dynamics in hyperactive insect antifreeze proteins.

Authors:  Konrad Meister; Simon Ebbinghaus; Yao Xu; John G Duman; Arthur DeVries; Martin Gruebele; David M Leitner; Martina Havenith
Journal:  Proc Natl Acad Sci U S A       Date:  2012-12-31       Impact factor: 11.205

5.  Implementing electrostatic polarization cannot fill the gap between experimental and theoretical measurements for the ultrafast fluorescence decay of myoglobin.

Authors:  Bingbing Lin; Ya Gao; Yongxiu Li; John Z H Zhang; Ye Mei
Journal:  J Mol Model       Date:  2014-03-27       Impact factor: 1.810

6.  Dynamics and mechanism of ultrafast water-protein interactions.

Authors:  Yangzhong Qin; Lijuan Wang; Dongping Zhong
Journal:  Proc Natl Acad Sci U S A       Date:  2016-06-23       Impact factor: 11.205

7.  Do guanidinium and tetrapropylammonium ions specifically interact with aromatic amino acid side chains?

Authors:  Bei Ding; Debopreeti Mukherjee; Jianxin Chen; Feng Gai
Journal:  Proc Natl Acad Sci U S A       Date:  2017-01-17       Impact factor: 11.205

8.  Cholesterol enhances surface water diffusion of phospholipid bilayers.

Authors:  Chi-Yuan Cheng; Luuk L C Olijve; Ravinath Kausik; Songi Han
Journal:  J Chem Phys       Date:  2014-12-14       Impact factor: 3.488

Review 9.  The dark energy of proteins comes to light: conformational entropy and its role in protein function revealed by NMR relaxation.

Authors:  A Joshua Wand
Journal:  Curr Opin Struct Biol       Date:  2012-12-13       Impact factor: 6.809

10.  Validation of response function construction and probing heterogeneous protein hydration by intrinsic tryptophan.

Authors:  Yangzhong Qin; Chih-Wei Chang; Lijuan Wang; Dongping Zhong
Journal:  J Phys Chem B       Date:  2012-11-02       Impact factor: 2.991

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.