Literature DB >> 19585996

[Ln(DPA)(3)](3-) is a convenient paramagnetic shift reagent for protein NMR studies.

Xun-Cheng Su1, Haobo Liang, Karin V Loscha, Gottfried Otting.   

Abstract

Paramagnetic lanthanide ions present outstanding tools for structural biology by NMR spectroscopy. Here we show that the 3:1 complexes between dipicolinic acid and lanthanides are paramagnetic reagents which can site-specifically bind to a wide range of proteins without formation of a covalent bond. The observed pseudocontact shifts can be interpreted by a single magnetic susceptibility anisotropy tensor, enabling its use for structure refinements. The resonance assignment of the paramagnetic spectrum is greatly facilitated by the rapid exchange between bound and free protein, leading to gradual chemical shift changes as the protein is titrated with the paramagnetic dipicolinic acid complex. The association with the paramagnetic lanthanide leads to weak molecular alignment in a magnetic field so that the reagents can be used for the measurement of residual dipolar couplings without the need of protein modification or anisotropic alignment media. The protein samples can be recovered by simple dialysis.

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Year:  2009        PMID: 19585996     DOI: 10.1021/ja9034957

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  10 in total

1.  Conformationally locked lanthanide chelating tags for convenient pseudocontact shift protein nuclear magnetic resonance spectroscopy.

Authors:  Daniel Joss; Roché M Walliser; Kaspar Zimmermann; Daniel Häussinger
Journal:  J Biomol NMR       Date:  2018-08-16       Impact factor: 2.835

2.  Tunable paramagnetic relaxation enhancements by [Gd(DPA)(3)] (3-) for protein structure analysis.

Authors:  Hiromasa Yagi; Karin V Loscha; Xun-Cheng Su; Mitchell Stanton-Cook; Thomas Huber; Gottfried Otting
Journal:  J Biomol NMR       Date:  2010-04-20       Impact factor: 2.835

3.  Engineering [Ln(DPA)3] 3- binding sites in proteins: a widely applicable method for tagging proteins with lanthanide ions.

Authors:  Xinying Jia; Hiromasa Yagi; Xun-Cheng Su; Mitchell Stanton-Cook; Thomas Huber; Gottfried Otting
Journal:  J Biomol NMR       Date:  2011-07-23       Impact factor: 2.835

4.  Structure-independent analysis of the breadth of the positional distribution of disordered groups in macromolecules from order parameters for long, variable-length vectors using NMR paramagnetic relaxation enhancement.

Authors:  Junji Iwahara; G Marius Clore
Journal:  J Am Chem Soc       Date:  2010-09-29       Impact factor: 15.419

Review 5.  Paramagnetic Chemical Probes for Studying Biological Macromolecules.

Authors:  Qing Miao; Christoph Nitsche; Henry Orton; Mark Overhand; Gottfried Otting; Marcellus Ubbink
Journal:  Chem Rev       Date:  2022-01-27       Impact factor: 72.087

6.  A systematic study of labelling an α-helix in a protein with a lanthanide using IDA-SH or NTA-SH tags.

Authors:  Hiromasa Yagi; Ansis Maleckis; Gottfried Otting
Journal:  J Biomol NMR       Date:  2012-12-22       Impact factor: 2.835

7.  Protein structure determination from pseudocontact shifts using ROSETTA.

Authors:  Christophe Schmitz; Robert Vernon; Gottfried Otting; David Baker; Thomas Huber
Journal:  J Mol Biol       Date:  2012-01-18       Impact factor: 5.469

8.  Hybrid luminescence materials assembled by [Ln(DPA)3](3-) and mesoporous host through ion-pairing interactions with high quantum efficiencies and long lifetimes.

Authors:  Qing-Feng Li; Dan Yue; Wei Lu; Xinlei Zhang; Chunyang Li; Zhenling Wang
Journal:  Sci Rep       Date:  2015-02-11       Impact factor: 4.379

9.  Localization of ligands within human carbonic anhydrase II using 19F pseudocontact shift analysis.

Authors:  Kaspar Zimmermann; Daniel Joss; Thomas Müntener; Elisa S Nogueira; Marc Schäfer; Livia Knörr; Fabien W Monnard; Daniel Häussinger
Journal:  Chem Sci       Date:  2019-04-10       Impact factor: 9.825

10.  Paramagnetic Ligand Tagging To Identify Protein Binding Sites.

Authors:  Ulrika Brath; Shashikala I Swamy; Alberte X Veiga; Ching-Chieh Tung; Filip Van Petegem; Máté Erdélyi
Journal:  J Am Chem Soc       Date:  2015-08-27       Impact factor: 15.419

  10 in total

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