Literature DB >> 19581361

The electron transfer system of syntrophically grown Desulfovibrio vulgaris.

Christopher B Walker1, Zhili He, Zamin K Yang, Joseph A Ringbauer, Qiang He, Jizhong Zhou, Gerrit Voordouw, Judy D Wall, Adam P Arkin, Terry C Hazen, Sergey Stolyar, David A Stahl.   

Abstract

Interspecies hydrogen transfer between organisms producing and consuming hydrogen promotes the decomposition of organic matter in most anoxic environments. Although syntrophic coupling between hydrogen producers and consumers is a major feature of the carbon cycle, mechanisms for energy recovery at the extremely low free energies of reactions typical of these anaerobic communities have not been established. In this study, comparative transcriptional analysis of a model sulfate-reducing microbe, Desulfovibrio vulgaris Hildenborough, suggested the use of alternative electron transfer systems dependent on growth modality. During syntrophic growth on lactate with a hydrogenotrophic methanogen, numerous genes involved in electron transfer and energy generation were upregulated in D. vulgaris compared with their expression in sulfate-limited monocultures. In particular, genes coding for the putative membrane-bound Coo hydrogenase, two periplasmic hydrogenases (Hyd and Hyn), and the well-characterized high-molecular-weight cytochrome (Hmc) were among the most highly expressed and upregulated genes. Additionally, a predicted operon containing genes involved in lactate transport and oxidation exhibited upregulation, further suggesting an alternative pathway for electrons derived from lactate oxidation during syntrophic growth. Mutations in a subset of genes coding for Coo, Hmc, Hyd, and Hyn impaired or severely limited syntrophic growth but had little effect on growth via sulfate respiration. These results demonstrate that syntrophic growth and sulfate respiration use largely independent energy generation pathways and imply that to understand microbial processes that sustain nutrient cycling, lifestyles not captured in pure culture must be considered.

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Year:  2009        PMID: 19581361      PMCID: PMC2737945          DOI: 10.1128/JB.00356-09

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  44 in total

1.  Energetics of Growth of a Defined Mixed Culture of Desulfovibrio vulgaris and Methanosarcina barkeri: Interspecies Hydrogen Transfer in Batch and Continuous Cultures.

Authors:  A S Traore; M L Fardeau; C E Hatchikian; J Le Gall; J P Belaich
Journal:  Appl Environ Microbiol       Date:  1983-11       Impact factor: 4.792

2.  NMR investigation of the solution conformation of oxidized flavodoxin from Desulfovibrio vulgaris. Determination of the tertiary structure and detection of protein-bound water molecules.

Authors:  M A Knauf; F Löhr; M Blümel; S G Mayhew; H Rüterjans
Journal:  Eur J Biochem       Date:  1996-06-01

3.  Targeted gene-replacement mutagenesis of dcrA, encoding an oxygen sensor of the sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough.

Authors:  Rongdian Fud; Gerrit Voordouw
Journal:  Microbiology (Reading)       Date:  1997-06       Impact factor: 2.777

4.  Transcriptional and proteomic analysis of a ferric uptake regulator (fur) mutant of Shewanella oneidensis: possible involvement of fur in energy metabolism, transcriptional regulation, and oxidative stress.

Authors:  Dorothea K Thompson; Alexander S Beliaev; Carol S Giometti; Sandra L Tollaksen; Tripti Khare; Douglas P Lies; Kenneth H Nealson; Hanjo Lim; John Yates; Craig C Brandt; James M Tiedje; Jizhong Zhou
Journal:  Appl Environ Microbiol       Date:  2002-02       Impact factor: 4.792

5.  Glycolate oxidoreductase in Escherichia coli.

Authors:  J M Lord
Journal:  Biochim Biophys Acta       Date:  1972-05-25

6.  Salt stress in Desulfovibrio vulgaris Hildenborough: an integrated genomics approach.

Authors:  Aindrila Mukhopadhyay; Zhili He; Eric J Alm; Adam P Arkin; Edward E Baidoo; Sharon C Borglin; Wenqiong Chen; Terry C Hazen; Qiang He; Hoi-Ying Holman; Katherine Huang; Rick Huang; Dominique C Joyner; Natalie Katz; Martin Keller; Paul Oeller; Alyssa Redding; Jun Sun; Judy Wall; Jing Wei; Zamin Yang; Huei-Che Yen; Jizhong Zhou; Jay D Keasling
Journal:  J Bacteriol       Date:  2006-06       Impact factor: 3.490

7.  Global transcriptome analysis of the heat shock response of Shewanella oneidensis.

Authors:  Haichun Gao; Yue Wang; Xueduan Liu; Tingfen Yan; Liyou Wu; Eric Alm; Adam Arkin; Dorothea K Thompson; Jizhong Zhou
Journal:  J Bacteriol       Date:  2004-11       Impact factor: 3.490

8.  The genome of Syntrophus aciditrophicus: life at the thermodynamic limit of microbial growth.

Authors:  Michael J McInerney; Lars Rohlin; Housna Mouttaki; UnMi Kim; Rebecca S Krupp; Luis Rios-Hernandez; Jessica Sieber; Christopher G Struchtemeyer; Anamitra Bhattacharyya; John W Campbell; Robert P Gunsalus
Journal:  Proc Natl Acad Sci U S A       Date:  2007-04-18       Impact factor: 11.205

9.  The intracellular localization of glycolate oxidoreductase in Escherichia coli.

Authors:  A K Sallal; N A Nimer
Journal:  FEBS Lett       Date:  1989-12-04       Impact factor: 4.124

10.  A prediction-based resampling method for estimating the number of clusters in a dataset.

Authors:  Sandrine Dudoit; Jane Fridlyand
Journal:  Genome Biol       Date:  2002-06-25       Impact factor: 13.583

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  53 in total

1.  Microbial community succession during lactate amendment and electron acceptor limitation reveals a predominance of metal-reducing Pelosinus spp.

Authors:  Jennifer J Mosher; Tommy J Phelps; Mircea Podar; Richard A Hurt; James H Campbell; Meghan M Drake; James G Moberly; Christopher W Schadt; Steven D Brown; Terry C Hazen; Adam P Arkin; Anthony V Palumbo; Boris A Faybishenko; Dwayne A Elias
Journal:  Appl Environ Microbiol       Date:  2012-01-20       Impact factor: 4.792

Review 2.  Dynamics in the mixed microbial concourse.

Authors:  Edwin H Wintermute; Pamela A Silver
Journal:  Genes Dev       Date:  2010-12-01       Impact factor: 11.361

3.  Sustainable syntrophic growth of Dehalococcoides ethenogenes strain 195 with Desulfovibrio vulgaris Hildenborough and Methanobacterium congolense: global transcriptomic and proteomic analyses.

Authors:  Yujie Men; Helene Feil; Nathan C Verberkmoes; Manesh B Shah; David R Johnson; Patrick K H Lee; Kimberlee A West; Stephen H Zinder; Gary L Andersen; Lisa Alvarez-Cohen
Journal:  ISME J       Date:  2011-09-01       Impact factor: 10.302

4.  The anaerobe-specific orange protein complex of Desulfovibrio vulgaris hildenborough is encoded by two divergent operons coregulated by σ54 and a cognate transcriptional regulator.

Authors:  Anouchka Fiévet; Laetitia My; Eric Cascales; Mireille Ansaldi; Sofia R Pauleta; Isabel Moura; Zorah Dermoun; Christophe S Bernard; Alain Dolla; Corinne Aubert
Journal:  J Bacteriol       Date:  2011-04-29       Impact factor: 3.490

5.  Erosion of functional independence early in the evolution of a microbial mutualism.

Authors:  Kristina L Hillesland; Sujung Lim; Jason J Flowers; Serdar Turkarslan; Nicolas Pinel; Grant M Zane; Nicholas Elliott; Yujia Qin; Liyou Wu; Nitin S Baliga; Jizhong Zhou; Judy D Wall; David A Stahl
Journal:  Proc Natl Acad Sci U S A       Date:  2014-09-29       Impact factor: 11.205

Review 6.  How sulphate-reducing microorganisms cope with stress: lessons from systems biology.

Authors:  Jizhong Zhou; Qiang He; Christopher L Hemme; Aindrila Mukhopadhyay; Kristina Hillesland; Aifen Zhou; Zhili He; Joy D Van Nostrand; Terry C Hazen; David A Stahl; Judy D Wall; Adam P Arkin
Journal:  Nat Rev Microbiol       Date:  2011-05-16       Impact factor: 60.633

7.  High-temperature protein G is essential for activity of the Escherichia coli clustered regularly interspaced short palindromic repeats (CRISPR)/Cas system.

Authors:  Ido Yosef; Moran G Goren; Ruth Kiro; Rotem Edgar; Udi Qimron
Journal:  Proc Natl Acad Sci U S A       Date:  2011-11-23       Impact factor: 11.205

Review 8.  Energy-converting hydrogenases: the link between H2 metabolism and energy conservation.

Authors:  Marie Charlotte Schoelmerich; Volker Müller
Journal:  Cell Mol Life Sci       Date:  2019-10-19       Impact factor: 9.261

9.  Deletion of the Desulfovibrio vulgaris carbon monoxide sensor invokes global changes in transcription.

Authors:  Lara Rajeev; Kristina L Hillesland; Grant M Zane; Aifen Zhou; Marcin P Joachimiak; Zhili He; Jizhong Zhou; Adam P Arkin; Judy D Wall; David A Stahl
Journal:  J Bacteriol       Date:  2012-08-17       Impact factor: 3.490

10.  Establishment and metabolic analysis of a model microbial community for understanding trophic and electron accepting interactions of subsurface anaerobic environments.

Authors:  Lance D Miller; Jennifer J Mosher; Amudhan Venkateswaran; Zamin K Yang; Anthony V Palumbo; Tommy J Phelps; Mircea Podar; Christopher W Schadt; Martin Keller
Journal:  BMC Microbiol       Date:  2010-05-24       Impact factor: 3.605

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