Literature DB >> 21123647

Dynamics in the mixed microbial concourse.

Edwin H Wintermute1, Pamela A Silver.   

Abstract

Isolated, clonal populations of cells are rarely found in nature. The emergent properties of microbial consortia present a challenge for the systems approach to biology, as chances for competition, communication, or collaboration multiply with the number of interacting agents. This review focuses on recent work on intercourse within biofilms, among quorum-sensing populations, and between cross-feeding metabolic cooperators. New tools from synthetic biology allow microbial interactions to be designed and tightly controlled, creating valuable model systems. We address both natural and synthetic partnerships, with an emphasis on how system behaviors derive from the properties of their components. Essential features of microbial biology arose in the context of a very mixed culture and cannot be understood without unscrambling it.

Mesh:

Year:  2010        PMID: 21123647      PMCID: PMC2994034          DOI: 10.1101/gad.1985210

Source DB:  PubMed          Journal:  Genes Dev        ISSN: 0890-9369            Impact factor:   11.361


  97 in total

1.  Long-Term Experimental Evolution in Escherichia coli. VIII. Dynamics of a Balanced Polymorphism.

Authors:  Daniel E Rozen; Richard E Lenski
Journal:  Am Nat       Date:  2000-01       Impact factor: 3.926

2.  Filamentous microfossils in a 3,235-million-year-old volcanogenic massive sulphide deposit.

Authors:  B Rasmussen
Journal:  Nature       Date:  2000-06-08       Impact factor: 49.962

3.  Methane-consuming archaea revealed by directly coupled isotopic and phylogenetic analysis.

Authors:  V J Orphan; C H House; K U Hinrichs; K D McKeegan; E F DeLong
Journal:  Science       Date:  2001-07-20       Impact factor: 47.728

Review 4.  LuxS quorum sensing: more than just a numbers game.

Authors:  Karina B Xavier; Bonnie L Bassler
Journal:  Curr Opin Microbiol       Date:  2003-04       Impact factor: 7.934

Review 5.  Quorum sensing: cell-to-cell communication in bacteria.

Authors:  Christopher M Waters; Bonnie L Bassler
Journal:  Annu Rev Cell Dev Biol       Date:  2005       Impact factor: 13.827

Review 6.  Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity.

Authors:  P Hugenholtz; B M Goebel; N R Pace
Journal:  J Bacteriol       Date:  1998-09       Impact factor: 3.490

7.  Repeated evolution of an acetate-crossfeeding polymorphism in long-term populations of Escherichia coli.

Authors:  D S Treves; S Manning; J Adams
Journal:  Mol Biol Evol       Date:  1998-07       Impact factor: 16.240

8.  Evolution of Escherichia coli during growth in a constant environment.

Authors:  R B Helling; C N Vargas; J Adams
Journal:  Genetics       Date:  1987-07       Impact factor: 4.562

9.  Microbial architecture of environmental sulfur processes: a novel syntrophic sulfur-metabolizing consortia.

Authors:  Kelsey L I Norlund; Gordon Southam; Tolek Tyliszczak; Yongfeng Hu; Chithra Karunakaran; Martin Obst; Adam P Hitchcock; Lesley A Warren
Journal:  Environ Sci Technol       Date:  2009-12-01       Impact factor: 9.028

Review 10.  Get the most out of your metagenome: computational analysis of environmental sequence data.

Authors:  Jeroen Raes; Konrad Ulrich Foerstner; Peer Bork
Journal:  Curr Opin Microbiol       Date:  2007-10-23       Impact factor: 7.934

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  65 in total

1.  A previously uncharacterized, nonphotosynthetic member of the Chromatiaceae is the primary CO2-fixing constituent in a self-regenerating biocathode.

Authors:  Zheng Wang; Dagmar H Leary; Anthony P Malanoski; Robert W Li; W Judson Hervey; Brian J Eddie; Gabrielle S Tender; Shelley G Yanosky; Gary J Vora; Leonard M Tender; Baochuan Lin; Sarah M Strycharz-Glaven
Journal:  Appl Environ Microbiol       Date:  2014-11-14       Impact factor: 4.792

2.  Competitive and cooperative metabolic interactions in bacterial communities.

Authors:  Shiri Freilich; Raphy Zarecki; Omer Eilam; Ella Shtifman Segal; Christopher S Henry; Martin Kupiec; Uri Gophna; Roded Sharan; Eytan Ruppin
Journal:  Nat Commun       Date:  2011-12-13       Impact factor: 14.919

3.  Bacterial swimmers that infiltrate and take over the biofilm matrix.

Authors:  Ali Houry; Michel Gohar; Julien Deschamps; Ekaterina Tischenko; Stéphane Aymerich; Alexandra Gruss; Romain Briandet
Journal:  Proc Natl Acad Sci U S A       Date:  2012-07-05       Impact factor: 11.205

4.  Bistability and oscillations in co-repressive synthetic microbial consortia.

Authors:  Mehdi Sadeghpour; Alan Veliz-Cuba; Gábor Orosz; Krešimir Josić; Matthew R Bennett
Journal:  Quant Biol       Date:  2017-03-30

5.  Synthetic Escherichia coli consortia engineered for syntrophy demonstrate enhanced biomass productivity.

Authors:  Hans C Bernstein; Steven D Paulson; Ross P Carlson
Journal:  J Biotechnol       Date:  2011-10-12       Impact factor: 3.307

Review 6.  Using artificial systems to explore the ecology and evolution of symbioses.

Authors:  Babak Momeni; Chi-Chun Chen; Kristina L Hillesland; Adam Waite; Wenying Shou
Journal:  Cell Mol Life Sci       Date:  2011-03-23       Impact factor: 9.261

7.  Dynamics in microbial communities: unraveling mechanisms to identify principles.

Authors:  Allan Konopka; Stephen Lindemann; Jim Fredrickson
Journal:  ISME J       Date:  2014-12-19       Impact factor: 10.302

8.  Evolution of microbial markets.

Authors:  Gijsbert D A Werner; Joan E Strassmann; Aniek B F Ivens; Daniel J P Engelmoer; Erik Verbruggen; David C Queller; Ronald Noë; Nancy Collins Johnson; Peter Hammerstein; E Toby Kiers
Journal:  Proc Natl Acad Sci U S A       Date:  2014-01-13       Impact factor: 11.205

9.  Syntrophic exchange in synthetic microbial communities.

Authors:  Michael T Mee; James J Collins; George M Church; Harris H Wang
Journal:  Proc Natl Acad Sci U S A       Date:  2014-04-28       Impact factor: 11.205

Review 10.  Genome-scale modelling of microbial metabolism with temporal and spatial resolution.

Authors:  Michael A Henson
Journal:  Biochem Soc Trans       Date:  2015-12       Impact factor: 5.407

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