Literature DB >> 19576908

All that glisters is not galled.

Francesc Rosselló1, Gabriel Valiente.   

Abstract

Galled trees, evolutionary networks with isolated reticulation cycles, have appeared under several slightly different definitions in the literature. In this paper, we establish the actual relationships between the main four such alternative definitions: namely, the original galled trees, level-1 networks, nested networks with nesting depth 1, and evolutionary networks with arc-disjoint reticulation cycles.

Mesh:

Year:  2009        PMID: 19576908     DOI: 10.1016/j.mbs.2009.06.007

Source DB:  PubMed          Journal:  Math Biosci        ISSN: 0025-5564            Impact factor:   2.144


  9 in total

1.  On encodings of phylogenetic networks of bounded level.

Authors:  Philippe Gambette; Katharina T Huber
Journal:  J Math Biol       Date:  2011-07-14       Impact factor: 2.259

2.  Spaces of phylogenetic networks from generalized nearest-neighbor interchange operations.

Authors:  Katharina T Huber; Simone Linz; Vincent Moulton; Taoyang Wu
Journal:  J Math Biol       Date:  2015-06-03       Impact factor: 2.259

3.  Identifying Species Network Features from Gene Tree Quartets Under the Coalescent Model.

Authors:  Hector Baños
Journal:  Bull Math Biol       Date:  2018-08-09       Impact factor: 1.758

4.  On the challenge of reconstructing level-1 phylogenetic networks from triplets and clusters.

Authors:  Philippe Gambette; K T Huber; S Kelk
Journal:  J Math Biol       Date:  2016-10-31       Impact factor: 2.259

5.  Distinguishing level-1 phylogenetic networks on the basis of data generated by Markov processes.

Authors:  Elizabeth Gross; Leo van Iersel; Remie Janssen; Mark Jones; Colby Long; Yukihiro Murakami
Journal:  J Math Biol       Date:  2021-09-04       Impact factor: 2.259

6.  Identifiability of species network topologies from genomic sequences using the logDet distance.

Authors:  Elizabeth S Allman; Hector Baños; John A Rhodes
Journal:  J Math Biol       Date:  2022-04-07       Impact factor: 2.164

7.  Characterization of phylogenetic networks with NetTest.

Authors:  Miguel Arenas; Mateus Patricio; David Posada; Gabriel Valiente
Journal:  BMC Bioinformatics       Date:  2010-05-20       Impact factor: 3.169

8.  NANUQ: a method for inferring species networks from gene trees under the coalescent model.

Authors:  Elizabeth S Allman; Hector Baños; John A Rhodes
Journal:  Algorithms Mol Biol       Date:  2019-12-06       Impact factor: 1.405

9.  Uprooted Phylogenetic Networks.

Authors:  P Gambette; K T Huber; G E Scholz
Journal:  Bull Math Biol       Date:  2017-07-31       Impact factor: 1.758

  9 in total

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