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Literature DB >> 19576842

What have RNAi screens taught us about viral-host interactions?

Abstract

The blossoming of genomic technologies and miniaturization has opened up the field of genomic scale cell-based screening to the study of viral-host interactions. RNAi technology, while still at its infancy, is being used to identify cellular factors required for various viral infections. This has led to the discovery of hundreds of new factors, and has increased our knowledge of the host factors that impact viral infection and highlighted the cellular pathways at play.

Entities: CellLine Chemical Disease Gene Species

Mesh：

Substances：
RNA, Small Interfering

Year: 2009 PMID： 19576842 PMCID： PMC2766546 DOI： 10.1016/j.mib.2009.06.002

Source DB: PubMed Journal: Curr Opin Microbiol ISSN： 1369-5274 Impact factor: 7.934

16 in total

1. Minimizing the risk of reporting false positives in large-scale RNAi screens.

Authors: Christophe J Echeverri; Philip A Beachy; Buzz Baum; Michael Boutros; Frank Buchholz; Sumit K Chanda; Julian Downward; Jan Ellenberg; Andrew G Fraser; Nir Hacohen; William C Hahn; Aimee L Jackson; Amy Kiger; Peter S Linsley; Lawrence Lum; Yong Ma; Bernard Mathey-Prévôt; David E Root; David M Sabatini; Jussi Taipale; Norbert Perrimon; René Bernards
Journal: Nat Methods Date: 2006-10 Impact factor: 28.547

2. Identification of novel therapeutic targets for HIV infection through functional genomic cDNA screening.

Authors: Deborah G Nguyen; Hong Yin; Yingyao Zhou; Karen C Wolff; Kelli L Kuhen; Jeremy S Caldwell
Journal: Virology Date: 2007-01-25 Impact factor: 3.616

3. A mutant allele of essential, general translation initiation factor DED1 selectively inhibits translation of a viral mRNA.

Authors: A O Noueiry; J Chen; P Ahlquist
Journal: Proc Natl Acad Sci U S A Date: 2000-11-21 Impact factor: 11.205

4. Identification of human kinases involved in hepatitis C virus replication by small interference RNA library screening.

Authors: Lubica Supekova; Frantisek Supek; Jongkook Lee; Shawn Chen; Nathanael Gray; John P Pezacki; Achim Schlapbach; Peter G Schultz
Journal: J Biol Chem Date: 2007-10-19 Impact factor: 5.157

5. RNA interference screen for human genes associated with West Nile virus infection.

Authors: Manoj N Krishnan; Aylwin Ng; Bindu Sukumaran; Felicia D Gilfoy; Pradeep D Uchil; Hameeda Sultana; Abraham L Brass; Rachel Adametz; Melody Tsui; Feng Qian; Ruth R Montgomery; Sima Lev; Peter W Mason; Raymond A Koski; Stephen J Elledge; Ramnik J Xavier; Herve Agaisse; Erol Fikrig
Journal: Nature Date: 2008-09-11 Impact factor: 49.962

6. Ring expanded nucleoside analogues inhibit RNA helicase and intracellular human immunodeficiency virus type 1 replication.

Authors: Venkat S R K Yedavalli; Ning Zhang; Hongyi Cai; Peng Zhang; Matthew F Starost; Ramachandra S Hosmane; Kuan-Teh Jeang
Journal: J Med Chem Date: 2008-08-05 Impact factor: 7.446

7. Identification of host proteins required for HIV infection through a functional genomic screen.

Authors: Abraham L Brass; Derek M Dykxhoorn; Yair Benita; Nan Yan; Alan Engelman; Ramnik J Xavier; Judy Lieberman; Stephen J Elledge
Journal: Science Date: 2008-01-10 Impact factor: 47.728

Review 8. Host cell factors in HIV replication: meta-analysis of genome-wide studies.

Authors: Frederic D Bushman; Nirav Malani; Jason Fernandes; Iván D'Orso; Gerard Cagney; Tracy L Diamond; Honglin Zhou; Daria J Hazuda; Amy S Espeseth; Renate König; Sourav Bandyopadhyay; Trey Ideker; Stephen P Goff; Nevan J Krogan; Alan D Frankel; John A T Young; Sumit K Chanda
Journal: PLoS Pathog Date: 2009-05-29 Impact factor: 6.823

9. COPI activity coupled with fatty acid biosynthesis is required for viral replication.

Authors: Sara Cherry; Amit Kunte; Hui Wang; Carolyn Coyne; Robert B Rawson; Norbert Perrimon
Journal: PLoS Pathog Date: 2006-10 Impact factor: 6.823

10. Drosophila RNAi screen identifies host genes important for influenza virus replication.

Authors: Linhui Hao; Akira Sakurai; Tokiko Watanabe; Ericka Sorensen; Chairul A Nidom; Michael A Newton; Paul Ahlquist; Yoshihiro Kawaoka
Journal: Nature Date: 2008-07-09 Impact factor: 49.962

24 in total

Review 1. RNAi screening: new approaches, understandings, and organisms.

Authors: Stephanie E Mohr; Norbert Perrimon
Journal: Wiley Interdiscip Rev RNA Date: 2011-09-22 Impact factor: 9.957

2. Genome-wide small interfering RNA screens reveal VAMP3 as a novel host factor required for Uukuniemi virus late penetration.

Authors: Roger Meier; Andrea Franceschini; Peter Horvath; Marilou Tetard; Roberta Mancini; Christian von Mering; Ari Helenius; Pierre-Yves Lozach
Journal: J Virol Date: 2014-05-21 Impact factor: 5.103

What have RNAi screens taught us about viral-host interactions?

1. Minimizing the risk of reporting false positives in large-scale RNAi screens.

2. Identification of novel therapeutic targets for HIV infection through functional genomic cDNA screening.

3. A mutant allele of essential, general translation initiation factor DED1 selectively inhibits translation of a viral mRNA.

4. Identification of human kinases involved in hepatitis C virus replication by small interference RNA library screening.

5. RNA interference screen for human genes associated with West Nile virus infection.

6. Ring expanded nucleoside analogues inhibit RNA helicase and intracellular human immunodeficiency virus type 1 replication.

7. Identification of host proteins required for HIV infection through a functional genomic screen.

Review 8. Host cell factors in HIV replication: meta-analysis of genome-wide studies.

9. COPI activity coupled with fatty acid biosynthesis is required for viral replication.

10. Drosophila RNAi screen identifies host genes important for influenza virus replication.

Review 1. RNAi screening: new approaches, understandings, and organisms.

2. Genome-wide small interfering RNA screens reveal VAMP3 as a novel host factor required for Uukuniemi virus late penetration.

3. An arrayed genome-scale lentiviral-enabled short hairpin RNA screen identifies lethal and rescuer gene candidates.

Review 4. RNAi screening comes of age: improved techniques and complementary approaches.

5. Genome-wide RNAi Screening to Identify Host Factors That Modulate Oncolytic Virus Therapy.

Review 6. The use of RNAi-based screens to identify host proteins involved in viral replication.

Review 7. Hunting Viral Receptors Using Haploid Cells.

8. Tetraspanin CD151 Promotes Initial Events in Human Cytomegalovirus Infection.

Review 9. Cell-based genomic screening: elucidating virus-host interactions.

10. siRNA and shRNA screens advance key understanding of host factors required for HIV-1 replication.