Literature DB >> 19574230

FACT and the proteasome promote promoter chromatin disassembly and transcriptional initiation.

Monica Ransom1, Stephanie K Williams, Mekonnen L Dechassa, Chandrima Das, Jeffrey Linger, Melissa Adkins, Chengwei Liu, Blaine Bartholomew, Jessica K Tyler.   

Abstract

The packaging of the eukaryotic genome into chromatin represses gene expression by blocking access of the general transcription machinery to the underlying DNA sequences. Accordingly, eukaryotes have developed a variety of mechanisms to disrupt, alter, or disassemble nucleosomes from promoter regions and open reading frames to allow transcription to occur. Although we know that chromatin disassembly from the yeast PHO5 promoter is triggered by the Pho4 activator, the mechanism is far from clear. Here we show that the Pho4 activator can occupy its nucleosome-bound DNA binding site within the PHO5 promoter. In contrast to the role of Saccharomyces cerevisiae FACT (facilitates chromatin transcription) complex in assembling chromatin within open reading frames, we find that FACT is involved in the disassembly of histones H2A/H2B from the PHO5 promoter during transcriptional induction. We have also discovered that the proteasome is required for efficient chromatin disassembly and transcriptional induction from the PHO5 promoter. Mutants of the degradation function of the proteasome have a defect in recruitment of the Pho4 activator, whereas mutants of the ATPase cap of the proteasome do recruit Pho4 but are still delayed for chromatin assembly. Finally, we rule out the possibility that the proteasome or ATPase cap is driving chromatin disassembly via a potential ATP-dependent chromatin remodeling activity.

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Year:  2009        PMID: 19574230      PMCID: PMC2749120          DOI: 10.1074/jbc.M109.019562

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  50 in total

1.  Opposing roles for Set2 and yFACT in regulating TBP binding at promoters.

Authors:  Debabrata Biswas; Rinku Dutta-Biswas; Doyel Mitra; Yoichiro Shibata; Brian D Strahl; Tim Formosa; David J Stillman
Journal:  EMBO J       Date:  2006-09-14       Impact factor: 11.598

2.  Histone H2B monoubiquitination functions cooperatively with FACT to regulate elongation by RNA polymerase II.

Authors:  Rushad Pavri; Bing Zhu; Guohong Li; Patrick Trojer; Subhrangsu Mandal; Ali Shilatifard; Danny Reinberg
Journal:  Cell       Date:  2006-05-19       Impact factor: 41.582

3.  A systems approach to measuring the binding energy landscapes of transcription factors.

Authors:  Sebastian J Maerkl; Stephen R Quake
Journal:  Science       Date:  2007-01-12       Impact factor: 47.728

4.  ATP binding and ATP hydrolysis play distinct roles in the function of 26S proteasome.

Authors:  Chang-Wei Liu; Xiaohua Li; David Thompson; Kerry Wooding; Tsui-ling Chang; Zhanyun Tang; Hongtao Yu; Philip J Thomas; George N DeMartino
Journal:  Mol Cell       Date:  2006-10-06       Impact factor: 17.970

Review 5.  The role of chromatin during transcription.

Authors:  Bing Li; Michael Carey; Jerry L Workman
Journal:  Cell       Date:  2007-02-23       Impact factor: 41.582

Review 6.  Transcriptional regulation by chromatin disassembly and reassembly.

Authors:  Stephanie K Williams; Jessica K Tyler
Journal:  Curr Opin Genet Dev       Date:  2007-02-20       Impact factor: 5.578

7.  Acetylation in the globular core of histone H3 on lysine-56 promotes chromatin disassembly during transcriptional activation.

Authors:  Stephanie K Williams; David Truong; Jessica K Tyler
Journal:  Proc Natl Acad Sci U S A       Date:  2008-06-24       Impact factor: 11.205

8.  Evidence that proteolysis of Gal4 cannot explain the transcriptional effects of proteasome ATPase mutations.

Authors:  S J Russell; S A Johnston
Journal:  J Biol Chem       Date:  2001-01-04       Impact factor: 5.157

9.  Histone-histone interactions and centromere function.

Authors:  L Glowczewski; P Yang; T Kalashnikova; M S Santisteban; M M Smith
Journal:  Mol Cell Biol       Date:  2000-08       Impact factor: 4.272

10.  Chromatin disassembly from the PHO5 promoter is essential for the recruitment of the general transcription machinery and coactivators.

Authors:  Melissa W Adkins; Stephanie K Williams; Jeffrey Linger; Jessica K Tyler
Journal:  Mol Cell Biol       Date:  2007-07-09       Impact factor: 4.272

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  43 in total

1.  In vitro reconstitution of PHO5 promoter chromatin remodeling points to a role for activator-nucleosome competition in vivo.

Authors:  Franziska Ertel; A Barbara Dirac-Svejstrup; Christina Bech Hertel; Dorothea Blaschke; Jesper Q Svejstrup; Philipp Korber
Journal:  Mol Cell Biol       Date:  2010-06-21       Impact factor: 4.272

Review 2.  Emerging roles of the 26S proteasome in nuclear hormone receptor-regulated transcription.

Authors:  Brian R Keppler; Trevor K Archer; H Karimi Kinyamu
Journal:  Biochim Biophys Acta       Date:  2010-08-20

Review 3.  Tone up your chromatin and stay young.

Authors:  Navneet K Matharu; Rakesh K Mishra
Journal:  J Biosci       Date:  2011-03       Impact factor: 1.826

Review 4.  The histone chaperone FACT: structural insights and mechanisms for nucleosome reorganization.

Authors:  Duane D Winkler; Karolin Luger
Journal:  J Biol Chem       Date:  2011-03-24       Impact factor: 5.157

5.  High mobility group protein-mediated transcription requires DNA damage marker γ-H2AX.

Authors:  Indrabahadur Singh; Nihan Ozturk; Julio Cordero; Aditi Mehta; Diya Hasan; Claudia Cosentino; Carlos Sebastian; Marcus Krüger; Mario Looso; Gianni Carraro; Saverio Bellusci; Werner Seeger; Thomas Braun; Raul Mostoslavsky; Guillermo Barreto
Journal:  Cell Res       Date:  2015-06-05       Impact factor: 25.617

6.  Establishment and Maintenance of Chromatin Architecture Are Promoted Independently of Transcription by the Histone Chaperone FACT and H3-K56 Acetylation in Saccharomyces cerevisiae.

Authors:  Laura L McCullough; Trang H Pham; Timothy J Parnell; Zaily Connell; Mahesh B Chandrasekharan; David J Stillman; Tim Formosa
Journal:  Genetics       Date:  2019-01-24       Impact factor: 4.562

7.  Disassembly of synthetic Agrobacterium T-DNA-protein complexes via the host SCF(VBF) ubiquitin-ligase complex pathway.

Authors:  Adi Zaltsman; Benoît Lacroix; Yedidya Gafni; Vitaly Citovsky
Journal:  Proc Natl Acad Sci U S A       Date:  2012-12-17       Impact factor: 11.205

8.  Single-cell nucleosome mapping reveals the molecular basis of gene expression heterogeneity.

Authors:  Eliza C Small; Liqun Xi; Ji-Ping Wang; Jonathan Widom; Jonathan D Licht
Journal:  Proc Natl Acad Sci U S A       Date:  2014-06-02       Impact factor: 11.205

9.  Fine-Tuning of FACT by the Ubiquitin Proteasome System in Regulation of Transcriptional Elongation.

Authors:  Rwik Sen; Jannatul Ferdoush; Amala Kaja; Sukesh R Bhaumik
Journal:  Mol Cell Biol       Date:  2016-05-16       Impact factor: 4.272

Review 10.  Chromatin and transcription in yeast.

Authors:  Oliver J Rando; Fred Winston
Journal:  Genetics       Date:  2012-02       Impact factor: 4.562

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