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Literature DB >> 22345607

Chromatin and transcription in yeast.

Abstract

Understanding the mechanisms by which chromatin structure controls eukaryotic transcription has been an intense area of investigation for the past 25 years. Many of the key discoveries that created the foundation for this field came from studies of Saccharomyces cerevisiae, including the discovery of the role of chromatin in transcriptional silencing, as well as the discovery of chromatin-remodeling factors and histone modification activities. Since that time, studies in yeast have continued to contribute in leading ways. This review article summarizes the large body of yeast studies in this field.

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Year: 2012 PMID： 22345607 PMCID： PMC3276623 DOI： 10.1534/genetics.111.132266

Source DB: PubMed Journal: Genetics ISSN： 0016-6731 Impact factor: 4.562

549 in total

1. Dissecting the regulatory circuitry of a eukaryotic genome.

Authors: F C Holstege; E G Jennings; J J Wyrick; T I Lee; C J Hengartner; M R Green; T R Golub; E S Lander; R A Young
Journal: Cell Date: 1998-11-25 Impact factor: 41.582

2. Activated RSC-nucleosome complex and persistently altered form of the nucleosome.

Authors: Y Lorch; B R Cairns; M Zhang; R D Kornberg
Journal: Cell Date: 1998-07-10 Impact factor: 41.582

3. Perturbation of nucleosome core structure by the SWI/SNF complex persists after its detachment, enhancing subsequent transcription factor binding.

Authors: J Côté; C L Peterson; J L Workman
Journal: Proc Natl Acad Sci U S A Date: 1998-04-28 Impact factor: 11.205

4. Essential and redundant functions of histone acetylation revealed by mutation of target lysines and loss of the Gcn5p acetyltransferase.

Authors: W Zhang; J R Bone; D G Edmondson; B M Turner; S Y Roth
Journal: EMBO J Date: 1998-06-01 Impact factor: 11.598

5. Subunits of the yeast SWI/SNF complex are members of the actin-related protein (ARP) family.

Authors: C L Peterson; Y Zhao; B T Chait
Journal: J Biol Chem Date: 1998-09-11 Impact factor: 5.157

6. Nucleosome structure of the yeast CHA1 promoter: analysis of activation-dependent chromatin remodeling of an RNA-polymerase-II-transcribed gene in TBP and RNA pol II mutants defective in vivo in response to acidic activators.

Authors: J M Moreira; S Holmberg
Journal: EMBO J Date: 1998-10-15 Impact factor: 11.598

7. Cse4p is a component of the core centromere of Saccharomyces cerevisiae.

Authors: P B Meluh; P Yang; L Glowczewski; D Koshland; M M Smith
Journal: Cell Date: 1998-09-04 Impact factor: 41.582

8. Identification of high-copy disruptors of telomeric silencing in Saccharomyces cerevisiae.

Authors: M S Singer; A Kahana; A J Wolf; L L Meisinger; S E Peterson; C Goggin; M Mahowald; D E Gottschling
Journal: Genetics Date: 1998-10 Impact factor: 4.562

9. Hir proteins are required for position-dependent gene silencing in Saccharomyces cerevisiae in the absence of chromatin assembly factor I.

Authors: P D Kaufman; J L Cohen; M A Osley
Journal: Mol Cell Biol Date: 1998-08 Impact factor: 4.272

10. Absence of Gcn5 HAT activity defines a novel state in the opening of chromatin at the PHO5 promoter in yeast.

Authors: P D Gregory; A Schmid; M Zavari; L Lui; S L Berger; W Hörz
Journal: Mol Cell Date: 1998-03 Impact factor: 17.970

135 in total

1. CPF Recruitment to Non-canonical Transcription Termination Sites Triggers Heterochromatin Assembly and Gene Silencing.

Authors: Tommy V Vo; Jothy Dhakshnamoorthy; Madeline Larkin; Martin Zofall; Gobi Thillainadesan; Vanivilasini Balachandran; Sahana Holla; David Wheeler; Shiv I S Grewal
Journal: Cell Rep Date: 2019-07-02 Impact factor: 9.423

Chromatin and transcription in yeast.

1. Dissecting the regulatory circuitry of a eukaryotic genome.

2. Activated RSC-nucleosome complex and persistently altered form of the nucleosome.

3. Perturbation of nucleosome core structure by the SWI/SNF complex persists after its detachment, enhancing subsequent transcription factor binding.

4. Essential and redundant functions of histone acetylation revealed by mutation of target lysines and loss of the Gcn5p acetyltransferase.

5. Subunits of the yeast SWI/SNF complex are members of the actin-related protein (ARP) family.

6. Nucleosome structure of the yeast CHA1 promoter: analysis of activation-dependent chromatin remodeling of an RNA-polymerase-II-transcribed gene in TBP and RNA pol II mutants defective in vivo in response to acidic activators.

7. Cse4p is a component of the core centromere of Saccharomyces cerevisiae.

8. Identification of high-copy disruptors of telomeric silencing in Saccharomyces cerevisiae.

9. Hir proteins are required for position-dependent gene silencing in Saccharomyces cerevisiae in the absence of chromatin assembly factor I.

10. Absence of Gcn5 HAT activity defines a novel state in the opening of chromatin at the PHO5 promoter in yeast.

1. CPF Recruitment to Non-canonical Transcription Termination Sites Triggers Heterochromatin Assembly and Gene Silencing.

Review 2. Regulation of histone modifying enzymes by the ubiquitin-proteasome system.

Review 3. Topology and control of the cell-cycle-regulated transcriptional circuitry.

4. Stochastic expression and epigenetic memory at the yeast HO promoter.

5. The ATP-dependent chromatin remodeling enzyme Fun30 represses transcription by sliding promoter-proximal nucleosomes.

6. The evolution of complex gene regulation by low-specificity binding sites.

Review 7. RNA polymerase II C-terminal domain: Tethering transcription to transcript and template.

8. Targeted in Situ Mutagenesis of Histone Genes in Budding Yeast.

9. Stochastic tuning of gene expression enables cellular adaptation in the absence of pre-existing regulatory circuitry.

Review 10. Chromatin dynamics: interplay between remodeling enzymes and histone modifications.