Literature DB >> 19570799

Maturation of high-density lipoproteins.

Amy Y Shih1, Stephen G Sligar, Klaus Schulten.   

Abstract

Human high-density lipoproteins (HDLs) are involved in the transport of cholesterol. The mechanism by which HDL assembles and functions is not well understood owing to a lack of structural information on circulating spherical HDL. Here, we report a series of molecular dynamics simulations that describe the maturation of discoidal HDL into spherical HDL upon incorporation of cholesterol ester as well as the resulting atomic level structure of a mature circulating spherical HDL particle. Sixty cholesterol ester molecules were added in a stepwise fashion to a discoidal HDL particle containing two apolipoproteins wrapped around a 160 dipalmitoylphosphatidylcholine lipid bilayer. The resulting matured particle, captured in a coarse-grained description, was then described in a consistent all-atom representation and analysed in chemical detail. The simulations show that maturation results from the formation of a highly dynamic hydrophobic core comprised of cholesterol ester surrounded by phospholipid and protein; the two apolipoprotein strands remain in a belt-like conformation as seen in the discoidal HDL particle, but with flexible N- and C-terminal helices and a central region stabilized by salt bridges. In the otherwise flexible lipoproteins, a less mobile central region provides an ideal location to bind lecithin cholesterol acyltransferase, the key enzyme that converts cholesterol to cholesterol ester during HDL maturation.

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Year:  2009        PMID: 19570799      PMCID: PMC2805102          DOI: 10.1098/rsif.2009.0173

Source DB:  PubMed          Journal:  J R Soc Interface        ISSN: 1742-5662            Impact factor:   4.118


  43 in total

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2.  Bridging microscopic and mesoscopic simulations of lipid bilayers.

Authors:  Gary Ayton; Gregory A Voth
Journal:  Biophys J       Date:  2002-12       Impact factor: 4.033

3.  The MARTINI force field: coarse grained model for biomolecular simulations.

Authors:  Siewert J Marrink; H Jelger Risselada; Serge Yefimov; D Peter Tieleman; Alex H de Vries
Journal:  J Phys Chem B       Date:  2007-06-15       Impact factor: 2.991

4.  Peptide aggregation and pore formation in a lipid bilayer: a combined coarse-grained and all atom molecular dynamics study.

Authors:  Lea Thøgersen; Birgit Schiøtt; Thomas Vosegaard; Niels Chr Nielsen; Emad Tajkhorshid
Journal:  Biophys J       Date:  2008-08-01       Impact factor: 4.033

5.  Molecular dynamics simulations of discoidal bilayers assembled from truncated human lipoproteins.

Authors:  Amy Y Shih; Ilia G Denisov; James C Phillips; Stephen G Sligar; Klaus Schulten
Journal:  Biophys J       Date:  2004-11-08       Impact factor: 4.033

6.  Effects of the neutral lipid content of high density lipoprotein on apolipoprotein A-I structure and particle stability.

Authors:  D L Sparks; W S Davidson; S Lund-Katz; M C Phillips
Journal:  J Biol Chem       Date:  1995-11-10       Impact factor: 5.157

7.  Coarse grained protein-lipid model with application to lipoprotein particles.

Authors:  Amy Y Shih; Anton Arkhipov; Peter L Freddolino; Klaus Schulten
Journal:  J Phys Chem B       Date:  2006-03-02       Impact factor: 2.991

8.  Structure of spheroidal HDL particles revealed by combined atomistic and coarse-grained simulations.

Authors:  Andrea Catte; James C Patterson; Denys Bashtovyy; Martin K Jones; Feifei Gu; Ling Li; Aldo Rampioni; Durba Sengupta; Timo Vuorela; Perttu Niemelä; Mikko Karttunen; Siewert Jan Marrink; Ilpo Vattulainen; Jere P Segrest
Journal:  Biophys J       Date:  2007-12-07       Impact factor: 4.033

9.  Methionine oxidation impairs reverse cholesterol transport by apolipoprotein A-I.

Authors:  Baohai Shao; Giorgio Cavigiolio; Nathan Brot; Michael N Oda; Jay W Heinecke
Journal:  Proc Natl Acad Sci U S A       Date:  2008-08-21       Impact factor: 11.205

10.  Disassembly of nanodiscs with cholate.

Authors:  Amy Y Shih; Peter L Freddolino; Stephen G Sligar; Klaus Schulten
Journal:  Nano Lett       Date:  2007-05-16       Impact factor: 11.189

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  20 in total

1.  Formation of salt bridges mediates internal dimerization of myosin VI medial tail domain.

Authors:  Hyeongjun Kim; Jen Hsin; Yanxin Liu; Paul R Selvin; Klaus Schulten
Journal:  Structure       Date:  2010-11-10       Impact factor: 5.006

2.  Detecting the functional complexities between high-density lipoprotein mimetics.

Authors:  Yoshitaka J Sei; Jungho Ahn; Taeyoung Kim; Eunjung Shin; Angel J Santiago-Lopez; Seung Soon Jang; Noo Li Jeon; Young C Jang; YongTae Kim
Journal:  Biomaterials       Date:  2018-04-06       Impact factor: 12.479

3.  "Sticky" and "promiscuous", the yin and yang of apolipoprotein A-I termini in discoidal high-density lipoproteins: a combined computational-experimental approach.

Authors:  Martin K Jones; Feifei Gu; Andrea Catte; Ling Li; Jere P Segrest
Journal:  Biochemistry       Date:  2011-03-04       Impact factor: 3.162

4.  Multiscale Simulations of Biological Membranes: The Challenge To Understand Biological Phenomena in a Living Substance.

Authors:  Giray Enkavi; Matti Javanainen; Waldemar Kulig; Tomasz Róg; Ilpo Vattulainen
Journal:  Chem Rev       Date:  2019-03-12       Impact factor: 60.622

Review 5.  Nanodiscs in Membrane Biochemistry and Biophysics.

Authors:  Ilia G Denisov; Stephen G Sligar
Journal:  Chem Rev       Date:  2017-02-08       Impact factor: 60.622

6.  Conformational and aggregation properties of the 1-93 fragment of apolipoprotein A-I.

Authors:  Jitka Petrlova; Arnab Bhattacherjee; Wouter Boomsma; Stefan Wallin; Jens O Lagerstedt; Anders Irbäck
Journal:  Protein Sci       Date:  2014-08-23       Impact factor: 6.725

7.  Scavenger Receptor Type B1 and Lipoprotein Nanoparticle Inhibit Myeloid-Derived Suppressor Cells.

Authors:  Michael P Plebanek; Debayan Bhaumik; Paul J Bryce; C Shad Thaxton
Journal:  Mol Cancer Ther       Date:  2017-12-27       Impact factor: 6.261

8.  Interfacial tension and surface pressure of high density lipoprotein, low density lipoprotein, and related lipid droplets.

Authors:  O H Samuli Ollila; Antti Lamberg; Maria Lehtivaara; Artturi Koivuniemi; Ilpo Vattulainen
Journal:  Biophys J       Date:  2012-09-19       Impact factor: 4.033

9.  Role of lipids in spheroidal high density lipoproteins.

Authors:  Timo Vuorela; Andrea Catte; Perttu S Niemelä; Anette Hall; Marja T Hyvönen; Siewert-Jan Marrink; Mikko Karttunen; Ilpo Vattulainen
Journal:  PLoS Comput Biol       Date:  2010-10-28       Impact factor: 4.475

10.  Dynamics of activation of lecithin:cholesterol acyltransferase by apolipoprotein A-I.

Authors:  Martin K Jones; Andrea Catte; Ling Li; Jere P Segrest
Journal:  Biochemistry       Date:  2009-12-01       Impact factor: 3.162

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