Literature DB >> 19567792

Cross-topic learning for work prioritization in systematic review creation and update.

Aaron M Cohen1, Kyle Ambert, Marian McDonagh.   

Abstract

OBJECTIVE: Machine learning systems can be an aid to experts performing systematic reviews (SRs) by automatically ranking journal articles for work-prioritization. This work investigates whether a topic-specific automated document ranking system for SRs can be improved using a hybrid approach, combining topic-specific training data with data from other SR topics.
DESIGN: A test collection was built using annotated reference files from 24 systematic drug class reviews. A support vector machine learning algorithm was evaluated with cross-validation, using seven different fractions of topic-specific training data in combination with samples from the other 23 topics. This approach was compared to both a baseline system, which used only topic-specific training data, and to a system using only the nontopic data sampled from the remaining topics. MEASUREMENTS: Mean area under the receiver-operating curve (AUC) was used as the measure of comparison.
RESULTS: On average, the hybrid system improved mean AUC over the baseline system by 20%, when topic-specific training data were scarce. The system performed significantly better than the baseline system at all levels of topic-specific training data. In addition, the system performed better than the nontopic system at all but the two smallest fractions of topic specific training data, and no worse than the nontopic system with these smallest amounts of topic specific training data.
CONCLUSIONS: Automated literature prioritization could be helpful in assisting experts to organize their time when performing systematic reviews. Future work will focus on extending the algorithm to use additional sources of topic-specific data, and on embedding the algorithm in an interactive system available to systematic reviewers during the literature review process.

Mesh:

Year:  2009        PMID: 19567792      PMCID: PMC2744720          DOI: 10.1197/jamia.M3162

Source DB:  PubMed          Journal:  J Am Med Inform Assoc        ISSN: 1067-5027            Impact factor:   4.497


  34 in total

1.  Reducing workload in systematic review preparation using automated citation classification.

Authors:  A M Cohen; W R Hersh; K Peterson; Po-Yin Yen
Journal:  J Am Med Inform Assoc       Date:  2005-12-15       Impact factor: 4.497

2.  Of studies, syntheses, synopses, summaries, and systems: the "5S" evolution of information services for evidence-based healthcare decisions.

Authors:  R Brian Haynes
Journal:  Evid Based Med       Date:  2006-12

3.  How quickly do systematic reviews go out of date? A survival analysis.

Authors:  Kaveh G Shojania; Margaret Sampson; Mohammed T Ansari; Jun Ji; Steve Doucette; David Moher
Journal:  Ann Intern Med       Date:  2007-07-16       Impact factor: 25.391

4.  Adaptive classifiers, topic drifts and GO annotations.

Authors:  Padmini Srinivasan
Journal:  AMIA Annu Symp Proc       Date:  2007-10-11

5.  Towards automatic recognition of scientifically rigorous clinical research evidence.

Authors:  Halil Kilicoglu; Dina Demner-Fushman; Thomas C Rindflesch; Nancy L Wilczynski; R Brian Haynes
Journal:  J Am Med Inform Assoc       Date:  2008-10-24       Impact factor: 4.497

6.  Surveillance search techniques identified the need to update systematic reviews.

Authors:  Margaret Sampson; Kaveh G Shojania; Jessie McGowan; Raymond Daniel; Tamara Rader; Alla E Iansavichene; Jun Ji; Mohammed T Ansari; David Moher
Journal:  J Clin Epidemiol       Date:  2008-02-14       Impact factor: 6.437

7.  Approximate Statistical Tests for Comparing Supervised Classification Learning Algorithms.

Authors: 
Journal:  Neural Comput       Date:  1998-09-15       Impact factor: 2.026

8.  Learning Boolean queries for article quality filtering.

Authors:  Yin Aphinyanaphongs; Constantin F Aliferis
Journal:  Stud Health Technol Inform       Date:  2004

9.  Enhancing access to the Bibliome: the TREC 2004 Genomics Track.

Authors:  William R Hersh; Ravi Teja Bhupatiraju; Laura Ross; Phoebe Roberts; Aaron M Cohen; Dale F Kraemer
Journal:  J Biomed Discov Collab       Date:  2006-03-13

10.  What kind of evidence is it that Evidence-Based Medicine advocates want health care providers and consumers to pay attention to?

Authors:  R Brian Haynes
Journal:  BMC Health Serv Res       Date:  2002-03-06       Impact factor: 2.655

View more
  20 in total

1.  Performance of support-vector-machine-based classification on 15 systematic review topics evaluated with the WSS@95 measure.

Authors:  Aaron M Cohen
Journal:  J Am Med Inform Assoc       Date:  2011 Jan-Feb       Impact factor: 4.497

Review 2.  A Prospective Evaluation of an Automated Classification System to Support Evidence-based Medicine and Systematic Review.

Authors:  Aaron M Cohen; Kyle Ambert; Marian McDonagh
Journal:  AMIA Annu Symp Proc       Date:  2010-11-13

3.  Improving Endpoint Detection to Support Automated Systematic Reviews.

Authors:  Ana Lucic; Catherine L Blake
Journal:  AMIA Annu Symp Proc       Date:  2017-02-10

4.  A new iterative method to reduce workload in systematic review process.

Authors:  Siddhartha Jonnalagadda; Diana Petitti
Journal:  Int J Comput Biol Drug Des       Date:  2013-02-21

5.  A new algorithm for reducing the workload of experts in performing systematic reviews.

Authors:  Stan Matwin; Alexandre Kouznetsov; Diana Inkpen; Oana Frunza; Peter O'Blenis
Journal:  J Am Med Inform Assoc       Date:  2010 Jul-Aug       Impact factor: 4.497

6.  A large-scale analysis of the reasons given for excluding articles that are retrieved by literature search during systematic review.

Authors:  Tracy Edinger; Aaron M Cohen
Journal:  AMIA Annu Symp Proc       Date:  2013-11-16

7.  MMiDaS-AE: Multi-modal Missing Data aware Stacked Autoencoder for Biomedical Abstract Screening.

Authors:  Eric W Lee; Byron C Wallace; Karla I Galaviz; Joyce C Ho
Journal:  Proc ACM Conf Health Inference Learn (2020)       Date:  2020-04-02

8.  Screening nonrandomized studies for medical systematic reviews: a comparative study of classifiers.

Authors:  Tanja Bekhuis; Dina Demner-Fushman
Journal:  Artif Intell Med       Date:  2012-06-05       Impact factor: 5.326

9.  Automatically finding relevant citations for clinical guideline development.

Authors:  Duy Duc An Bui; Siddhartha Jonnalagadda; Guilherme Del Fiol
Journal:  J Biomed Inform       Date:  2015-09-10       Impact factor: 6.317

10.  Studying the potential impact of automated document classification on scheduling a systematic review update.

Authors:  Aaron M Cohen; Kyle Ambert; Marian McDonagh
Journal:  BMC Med Inform Decis Mak       Date:  2012-04-19       Impact factor: 2.796

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.