Literature DB >> 19565337

Millisecond dynamics in the allosteric enzyme imidazole glycerol phosphate synthase (IGPS) from Thermotoga maritima.

James Lipchock1, J Patrick Loria.   

Abstract

IGPS is a 51 kDa heterodimeric enzyme comprised of two proteins, HisH and HisF, that catalyze the hydrolysis of glutamine to produce NH(3) in the HisH active site and the cyclization of ammonia with N'-[(5'-phosphoribulosyl)formimino]-5-aminoimidazole-4-carboxamide-ribonucleotide (PRFAR) in HisF to produce imidazole glycerol phosphate (IGP) and 5-aminoimidazole-4-carboxamide ribotide (AICAR). Binding of PRFAR and IGP stimulates glutaminase activity in the HisH enzyme over 5,000 and 100-fold, respectively, despite the active sites being >25 A apart. The details of this long-range protein communication process were investigated by solution NMR spectroscopy and CPMG relaxation dispersion experiments. Formation of the heterodimer enzyme results in a reduction in millisecond motions in HisF that extend throughout the protein. Binding of lGP results in an increase in protein-wide millisecond dynamics evidenced as severe NMR line broadening and elevated R (ex) values. Together, these data demonstrate a grouping of flexible residues that link the HisF active site with the protein interface to which HisH binds and provide a model for the path of communication between the IGPS active sites.

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Year:  2009        PMID: 19565337      PMCID: PMC2918893          DOI: 10.1007/s10858-009-9337-8

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  39 in total

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Journal:  Biochemistry       Date:  1997-09-16       Impact factor: 3.162

6.  Structure of carbamoyl phosphate synthetase: a journey of 96 A from substrate to product.

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Journal:  Biochemistry       Date:  1997-05-27       Impact factor: 3.162

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Journal:  Cell Mol Life Sci       Date:  1998-03       Impact factor: 9.261

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Journal:  J Bacteriol       Date:  1993-09       Impact factor: 3.490

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Journal:  Biochemistry       Date:  1995-02-21       Impact factor: 3.162

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  16 in total

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4.  Community Network Analysis of Allosteric Proteins.

Authors:  Ivan Rivalta; Victor S Batista
Journal:  Methods Mol Biol       Date:  2021

5.  Allosteric Communication Disrupted by a Small Molecule Binding to the Imidazole Glycerol Phosphate Synthase Protein-Protein Interface.

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6.  Accelerating 2D NMR relaxation dispersion experiments using iterated maps.

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Journal:  J Biomol NMR       Date:  2019-07-06       Impact factor: 2.835

7.  Dissecting Dynamic Allosteric Pathways Using Chemically Related Small-Molecule Activators.

Authors:  George P Lisi; Gregory A Manley; Heidi Hendrickson; Ivan Rivalta; Victor S Batista; J Patrick Loria
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9.  Interdomain dynamics and coactivation of the mRNA decapping enzyme Dcp2 are mediated by a gatekeeper tryptophan.

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Review 10.  Using NMR spectroscopy to elucidate the role of molecular motions in enzyme function.

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