Literature DB >> 19554610

Regulation, necessity, and the misinterpretation of knockouts.

Jamie Davies1.   

Abstract

Much contemporary biology consists of identifying the molecular components that associate to perform biological functions, then discovering how these functions are controlled. The concept of control is key to biological understanding, at least of the physiological kind; identifying regulators of processes underpins ideas of causality and allows complicated, multicomponent systems to be summarized in relatively simple diagrams and models. Unfortunately, as this article demonstrates by drawing on published articles, there is a growing tendency for authors to claim that a molecule is a 'regulator' of something on evidence that cannot support the conclusion. In particular, gene knockout experiments, which can demonstrate only that a molecule is necessary for a process, are all too frequently being misinterpreted as revealing regulation. This logical error threatens to blur the important distinction between regulation and mere necessity and therefore to weaken one of our strongest tools for comprehending how organisms work.

Mesh:

Year:  2009        PMID: 19554610     DOI: 10.1002/bies.200900044

Source DB:  PubMed          Journal:  Bioessays        ISSN: 0265-9247            Impact factor:   4.345


  10 in total

1.  Differential and integral views of genetics in computational systems biology.

Authors:  Denis Noble
Journal:  Interface Focus       Date:  2010-11-17       Impact factor: 3.906

Review 2.  Neo-Darwinism, the modern synthesis and selfish genes: are they of use in physiology?

Authors:  Denis Noble
Journal:  J Physiol       Date:  2010-12-06       Impact factor: 5.182

3.  Generating anatomical variation through mutations in networks - implications for evolution.

Authors:  Jonathan Bard
Journal:  J Anat       Date:  2014-06-17       Impact factor: 2.610

Review 4.  Considerations and guidelines for mouse metabolic phenotyping in diabetes research.

Authors:  Thierry Alquier; Vincent Poitout
Journal:  Diabetologia       Date:  2017-11-16       Impact factor: 10.122

5.  The next evolutionary synthesis: from Lamarck and Darwin to genomic variation and systems biology.

Authors:  Jonathan Bl Bard
Journal:  Cell Commun Signal       Date:  2011-11-03       Impact factor: 5.712

Review 6.  Is information a proper observable for biological organization?

Authors:  G Longo; P-A Miquel; C Sonnenschein; A M Soto
Journal:  Prog Biophys Mol Biol       Date:  2012-07-13       Impact factor: 3.667

7.  A library of mammalian effector modules for synthetic morphology.

Authors:  Elise Cachat; Weijia Liu; Peter Hohenstein; Jamie A Davies
Journal:  J Biol Eng       Date:  2014-11-19       Impact factor: 4.355

8.  Integrated β-catenin, BMP, PTEN, and Notch signalling patterns the nephron.

Authors:  Nils O Lindström; Melanie L Lawrence; Sally F Burn; Jeanette A Johansson; Elvira R M Bakker; Rachel A Ridgway; C-Hong Chang; Michele J Karolak; Leif Oxburgh; Denis J Headon; Owen J Sansom; Ron Smits; Jamie A Davies; Peter Hohenstein
Journal:  Elife       Date:  2015-02-03       Impact factor: 8.140

9.  The PI3K pathway balances self-renewal and differentiation of nephron progenitor cells through β-catenin signaling.

Authors:  Nils Olof Lindström; Neil Oliver Carragher; Peter Hohenstein
Journal:  Stem Cell Reports       Date:  2015-03-05       Impact factor: 7.765

Review 10.  The Significance of an Enhanced Concept of the Organism for Medicine.

Authors:  Bernd Rosslenbroich
Journal:  Evid Based Complement Alternat Med       Date:  2016-06-29       Impact factor: 2.629

  10 in total

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