Literature DB >> 19540850

The RecB nuclease domain binds to RecA-DNA filaments: implications for filament loading.

Debora Lucarelli1, Ying A Wang, Vitold E Galkin, Xiong Yu, Dale B Wigley, Edward H Egelman.   

Abstract

The E. coli RecBCD enzyme facilitates the loading of RecA onto single-stranded DNA produced by the combined helicase/nuclease activity of RecBCD. The nuclease domain of RecB protein, RecB(nuc), has been previously shown to bind RecA. Surprisingly, RecB(nuc) also binds to phage and eukaryotic homologs of RecA, leading to the suggestion that RecB(nuc) interacts with the polymerization motif that is present in all three proteins. This mode of interaction could only be with monomeric RecA, as this motif would be buried in filaments. We show that RecB(nuc) binds extensively to the outside of RecA-DNA filaments. Three-dimensional reconstructions suggest that RecB(nuc) binds to the ATP-binding core of RecA, with a displacement of the C-terminal domain of RecA. Solution experiments confirm that the interaction of RecB(nuc) is only with the RecA core. Since the RecA C-terminal domain has been shown to be regulatory, the interaction observed may be part of the loading mechanism where RecB displaces the RecA C-terminal domain and activates a RecA monomer for polymerization.

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Year:  2009        PMID: 19540850      PMCID: PMC2749006          DOI: 10.1016/j.jmb.2009.06.042

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  34 in total

1.  ATP-mediated conformational changes in the RecA filament.

Authors:  Margaret S VanLoock; Xiong Yu; Shixin Yang; Alex L Lai; Claudia Low; Michael J Campbell; Edward H Egelman
Journal:  Structure       Date:  2003-02       Impact factor: 5.006

2.  Do the utrophin tandem calponin homology domains bind F-actin in a compact or extended conformation?

Authors:  Vitold E Galkin; Albina Orlova; Margaret S VanLoock; Edward H Egelman
Journal:  J Mol Biol       Date:  2003-08-29       Impact factor: 5.469

3.  The DinI protein stabilizes RecA protein filaments.

Authors:  Shelley L Lusetti; Oleg N Voloshin; Ross B Inman; R Daniel Camerini-Otero; Michael M Cox
Journal:  J Biol Chem       Date:  2004-05-10       Impact factor: 5.157

4.  Crystal structure of archaeal recombinase RADA: a snapshot of its extended conformation.

Authors:  Yan Wu; Yujiong He; Ignace A Moya; Xinguo Qian; Yu Luo
Journal:  Mol Cell       Date:  2004-08-13       Impact factor: 17.970

5.  Crystal structure of a Rad51 filament.

Authors:  Adam B Conway; Thomas W Lynch; Ying Zhang; Gary S Fortin; Cindy W Fung; Lorraine S Symington; Phoebe A Rice
Journal:  Nat Struct Mol Biol       Date:  2004-07-04       Impact factor: 15.369

6.  Formation of heteroduplex DNA promoted by the combined activities of Escherichia coli recA and recBCD proteins.

Authors:  L J Roman; S C Kowalczykowski
Journal:  J Biol Chem       Date:  1989-11-05       Impact factor: 5.157

7.  Increase of the DNA strand assimilation activity of recA protein by removal of the C terminus and structure-function studies of the resulting protein fragment.

Authors:  R C Benedict; S C Kowalczykowski
Journal:  J Biol Chem       Date:  1988-10-25       Impact factor: 5.157

8.  The C terminus of the Escherichia coli RecA protein modulates the DNA binding competition with single-stranded DNA-binding protein.

Authors:  Aimee L Eggler; Shelley L Lusetti; Michael M Cox
Journal:  J Biol Chem       Date:  2003-02-20       Impact factor: 5.157

9.  Full-length archaeal Rad51 structure and mutants: mechanisms for RAD51 assembly and control by BRCA2.

Authors:  David S Shin; Luca Pellegrini; Douglas S Daniels; Biana Yelent; Lisa Craig; Debbie Bates; David S Yu; Mahmud K Shivji; Chiharu Hitomi; Andrew S Arvai; Niels Volkmann; Hiro Tsuruta; Tom L Blundell; Ashok R Venkitaraman; John A Tainer
Journal:  EMBO J       Date:  2003-09-01       Impact factor: 11.598

10.  Structural basis for octameric ring formation and DNA interaction of the human homologous-pairing protein Dmc1.

Authors:  Takashi Kinebuchi; Wataru Kagawa; Rima Enomoto; Kozo Tanaka; Kiyoshi Miyagawa; Takehiko Shibata; Hitoshi Kurumizaka; Shigeyuki Yokoyama
Journal:  Mol Cell       Date:  2004-05-07       Impact factor: 17.970

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  4 in total

1.  Pathways for double-strand break repair in genetically unstable Z-DNA-forming sequences.

Authors:  Diem T Kha; Guliang Wang; Nithya Natrajan; Lynn Harrison; Karen M Vasquez
Journal:  J Mol Biol       Date:  2010-03-27       Impact factor: 5.469

2.  RecF and RecR Play Critical Roles in the Homologous Recombination and Single-Strand Annealing Pathways of Mycobacteria.

Authors:  Richa Gupta; Stewart Shuman; Michael S Glickman
Journal:  J Bacteriol       Date:  2015-07-20       Impact factor: 3.490

Review 3.  The cell pole: the site of cross talk between the DNA uptake and genetic recombination machinery.

Authors:  Dawit Kidane; Silvia Ayora; Joann B Sweasy; Peter L Graumann; Juan C Alonso
Journal:  Crit Rev Biochem Mol Biol       Date:  2012-10-09       Impact factor: 8.250

4.  Single-molecule insight into stalled replication fork rescue in Escherichia coli.

Authors:  Piero R Bianco; Yue Lu
Journal:  Nucleic Acids Res       Date:  2021-05-07       Impact factor: 16.971

  4 in total

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