Literature DB >> 19533375

Histidine side-chain dynamics and protonation monitored by 13C CPMG NMR relaxation dispersion.

Mathias A S Hass1, Ali Yilmaz, Hans E M Christensen, Jens J Led.   

Abstract

The use of 13C NMR relaxation dispersion experiments to monitor micro-millisecond fluctuations in the protonation states of histidine residues in proteins is investigated. To illustrate the approach, measurements on three specifically 13C labeled histidine residues in plastocyanin (PCu) from Anabaena variabilis (A.v.) are presented. Significant Carr-Purcell-Meiboom-Gill (CPMG) relaxation dispersion is observed for 13C(epsilon1) nuclei in the histidine imidazole rings of A.v. PCu. The chemical shift changes obtained from the CPMG dispersion data are in good agreement with those obtained from the chemical shift titration experiments, and the CPMG derived exchange rates agree with those obtained previously from 15N backbone relaxation measurements. Compared to measurements of backbone nuclei, 13C(epsilon1) dispersion provides a more direct method to monitor interchanging protonation states or other kinds of conformational changes of histidine side chains or their environment. Advantages and shortcomings of using the 13C(epsilon1) dispersion experiments in combination with chemical shift titration experiments to obtain information on exchange dynamics of the histidine side chains are discussed.

Entities:  

Mesh:

Substances:

Year:  2009        PMID: 19533375     DOI: 10.1007/s10858-009-9332-0

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  21 in total

1.  Tautomerism of histidine 64 associated with proton transfer in catalysis of carbonic anhydrase.

Authors:  Hideto Shimahara; Takuya Yoshida; Yasutaka Shibata; Masato Shimizu; Yoshimasa Kyogoku; Fumio Sakiyama; Takashi Nakazawa; Shin-ichi Tate; Shin-ya Ohki; Takeshi Kato; Hozumi Moriyama; Ken-ichi Kishida; Yasuo Tano; Tadayasu Ohkubo; Yuji Kobayashi
Journal:  J Biol Chem       Date:  2007-01-03       Impact factor: 5.157

2.  Determination of the tautomeric form of the imidazole ring of L-histidine in basic solution by carbon-13 magnetic resonance spectroscopy.

Authors:  W F Reynolds; I R Peat; M H Freedman; J R Lyerla
Journal:  J Am Chem Soc       Date:  1973-01-24       Impact factor: 15.419

3.  Tautomerism, acid-base equilibria, and H-bonding of the six histidines in subtilisin BPN' by NMR.

Authors:  Regina M Day; Craig J Thalhauser; James L Sudmeier; Matthew P Vincent; Ekaterina V Torchilin; David G Sanford; Christopher W Bachovchin; William W Bachovchin
Journal:  Protein Sci       Date:  2003-04       Impact factor: 6.725

4.  Identification of histidine tautomers in proteins by 2D 1H/13C(delta2) one-bond correlated NMR.

Authors:  James L Sudmeier; Elizabeth M Bradshaw; Kristin E Coffman Haddad; Regina M Day; Craig J Thalhauser; Peter A Bullock; William W Bachovchin
Journal:  J Am Chem Soc       Date:  2003-07-16       Impact factor: 15.419

5.  Characterization of micros-ms dynamics of proteins using a combined analysis of 15N NMR relaxation and chemical shift: conformational exchange in plastocyanin induced by histidine protonations.

Authors:  Mathias A S Hass; Marianne H Thuesen; Hans E M Christensen; Jens J Led
Journal:  J Am Chem Soc       Date:  2004-01-28       Impact factor: 15.419

6.  Kinetics and mechanism of the acid transition of the active site in plastocyanin.

Authors:  Mathias A S Hass; Hans E M Christensen; Jingdong Zhang; Jens J Led
Journal:  Biochemistry       Date:  2007-11-17       Impact factor: 3.162

7.  Biosynthetic 13C labeling of aromatic side chains in proteins for NMR relaxation measurements.

Authors:  Kaare Teilum; Ulrika Brath; Patrik Lundström; Mikael Akke
Journal:  J Am Chem Soc       Date:  2006-03-01       Impact factor: 15.419

8.  Crystal structure analyses of reduced (CuI) poplar plastocyanin at six pH values.

Authors:  J M Guss; P R Harrowell; M Murata; V A Norris; H C Freeman
Journal:  J Mol Biol       Date:  1986-11-20       Impact factor: 5.469

9.  Tautomeric state of alpha-sarcin histidines. Ndelta tautomers are a common feature in the active site of extracellular microbial ribonucleases.

Authors:  José Manuel Pérez-Cañadilllas; Ma Flor García-Mayoral; Douglas V Laurents; Alvaro Martínez del Pozo; José G Gavilanes; Manuel Rico; Marta Bruix
Journal:  FEBS Lett       Date:  2003-01-16       Impact factor: 4.124

10.  Tautomeric states of the active-site histidines of phosphorylated and unphosphorylated IIIGlc, a signal-transducing protein from Escherichia coli, using two-dimensional heteronuclear NMR techniques.

Authors:  J G Pelton; D A Torchia; N D Meadow; S Roseman
Journal:  Protein Sci       Date:  1993-04       Impact factor: 6.725

View more
  6 in total

1.  Mobility of Histidine Side Chains Analyzed with 15N NMR Relaxation and Cross-Correlation Data: Insight into Zinc-Finger-DNA Interactions.

Authors:  Catherine A Kemme; Ross H Luu; Chuanying Chen; Channing C Pletka; B Montgomery Pettitt; Junji Iwahara
Journal:  J Phys Chem B       Date:  2019-04-18       Impact factor: 2.991

2.  Assessing the fractions of tautomeric forms of the imidazole ring of histidine in proteins as a function of pH.

Authors:  Jorge A Vila; Yelena A Arnautova; Yury Vorobjev; Harold A Scheraga
Journal:  Proc Natl Acad Sci U S A       Date:  2011-03-21       Impact factor: 11.205

3.  Active-Site pKa Determination for Photoactive Yellow Protein Rationalizes Slow Ground-State Recovery.

Authors:  Nur Alia Oktaviani; Trijntje J Pool; Yuichi Yoshimura; Hironari Kamikubo; Ruud M Scheek; Mikio Kataoka; Frans A A Mulder
Journal:  Biophys J       Date:  2017-05-23       Impact factor: 4.033

4.  Limiting values of the 15N chemical shift of the imidazole ring of histidine at high pH.

Authors:  Jorge A Vila
Journal:  J Phys Chem B       Date:  2012-02-29       Impact factor: 2.991

5.  Comprehensive determination of protein tyrosine pKa values for photoactive yellow protein using indirect 13C NMR spectroscopy.

Authors:  Nur Alia Oktaviani; Trijntje J Pool; Hironari Kamikubo; Jelle Slager; Ruud M Scheek; Mikio Kataoka; Frans A A Mulder
Journal:  Biophys J       Date:  2012-02-07       Impact factor: 4.033

6.  2D IR spectroscopy of histidine: probing side-chain structure and dynamics via backbone amide vibrations.

Authors:  Ayanjeet Ghosh; Matthew J Tucker; Feng Gai
Journal:  J Phys Chem B       Date:  2014-04-18       Impact factor: 2.991

  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.