Literature DB >> 12848537

Identification of histidine tautomers in proteins by 2D 1H/13C(delta2) one-bond correlated NMR.

James L Sudmeier1, Elizabeth M Bradshaw, Kristin E Coffman Haddad, Regina M Day, Craig J Thalhauser, Peter A Bullock, William W Bachovchin.   

Abstract

If the 13Cdelta2 chemical shift of neutral ("high pH") histidine is >122 ppm, primarily Ndelta1-H tautomer (2) is indicated; if it is <122 ppm, primarily Nepsilon2-H tautomer (1) is indicated. His resonances from the catalytic triad of active serine proteases, for example, are readily distinguished from those of denatured enzyme. The 13Cdelta2 chemical shifts increased by 6.2 ppm for the catalytic histidines in both alpha-lytic protease and subtilisin BPN' in raising the pH from that of imidazolium cation to that of tautomer 2. This tautomer identification method is easy to implement, requiring only bioincorporation of [U-13C] (or the more readily available [U-13C,15N])-histidine. Standard 1H/13C correlation HMQC or HSQC NMR pulse programs then yield the 13Cdelta2 chemical shifts with the benefit of high 1H sensitivity. Because of large one-bond spin-couplings (1JCH approximately 200 Hz), the method should extend to proteins having large 1H and 13C line widths, including very high molecular weights.

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Year:  2003        PMID: 12848537     DOI: 10.1021/ja034072c

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  27 in total

1.  Solid-state NMR and density functional theory studies of ionization states of thiamin.

Authors:  Sivakumar Paramasivam; Anand Balakrishnan; Olga Dmitrenko; Amy Godert; Tadhg P Begley; Frank Jordan; Tatyana Polenova
Journal:  J Phys Chem B       Date:  2010-12-22       Impact factor: 2.991

2.  Assessing the fractions of tautomeric forms of the imidazole ring of histidine in proteins as a function of pH.

Authors:  Jorge A Vila; Yelena A Arnautova; Yury Vorobjev; Harold A Scheraga
Journal:  Proc Natl Acad Sci U S A       Date:  2011-03-21       Impact factor: 11.205

3.  The pKa values of the catalytic residues in the retaining glycoside hydrolase T26H mutant of T4 lysozyme.

Authors:  Jacob A Brockerman; Mark Okon; Stephen G Withers; Lawrence P McIntosh
Journal:  Protein Sci       Date:  2019-01-12       Impact factor: 6.725

4.  Photocycle-dependent conformational changes in the proteorhodopsin cross-protomer Asp-His-Trp triad revealed by DNP-enhanced MAS-NMR.

Authors:  Jakob Maciejko; Jagdeep Kaur; Johanna Becker-Baldus; Clemens Glaubitz
Journal:  Proc Natl Acad Sci U S A       Date:  2019-04-04       Impact factor: 11.205

5.  Zinc finger domain of the human DTX protein adopts a unique RING fold.

Authors:  Kazuhide Miyamoto; Yuma Fujiwara; Kazuki Saito
Journal:  Protein Sci       Date:  2019-04-12       Impact factor: 6.725

6.  Limiting values of the 15N chemical shift of the imidazole ring of histidine at high pH.

Authors:  Jorge A Vila
Journal:  J Phys Chem B       Date:  2012-02-29       Impact factor: 2.991

7.  Characterization of the two conformations adopted by the T3SS inner-membrane protein PrgK.

Authors:  Julien R C Bergeron; Jacob A Brockerman; Marija Vuckovic; Wanyin Deng; Mark Okon; B Brett Finlay; Lawrence P McIntosh; Natalie C J Strynadka
Journal:  Protein Sci       Date:  2018-08-10       Impact factor: 6.725

8.  Limiting Values of the one-bond C-H Spin-Spin Coupling Constants of the Imidazole Ring of Histidine at High-pH.

Authors:  Jorge A Vila; Harold A Scheraga
Journal:  J Mol Struct       Date:  2017-01-08       Impact factor: 3.196

9.  The RING domain of human promyelocytic leukemia protein (PML).

Authors:  Shu-Yu Huang; Chi-Fon Chang; Pei-Ju Fang; Mandar T Naik; Peter Güntert; Hsiu-Ming Shih; Tai-Huang Huang
Journal:  J Biomol NMR       Date:  2015-01-28       Impact factor: 2.835

10.  Solution structure of the parvulin-type PPIase domain of Staphylococcus aureus PrsA--implications for the catalytic mechanism of parvulins.

Authors:  Outi Heikkinen; Raili Seppala; Helena Tossavainen; Sami Heikkinen; Harri Koskela; Perttu Permi; Ilkka Kilpeläinen
Journal:  BMC Struct Biol       Date:  2009-03-24
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