Literature DB >> 19529792

Bright-field analysis of phi29 DNA packaging motor using a magnetomechanical system.

Chun-Li Chang, Hui Zhang, Dan Shu, Peixuan Guo, Cagri A Savran.   

Abstract

We report a simple and robust magnetomechanical system for direct visual observation of the DNA packaging behavior of the bacteriophage phi29 in real time. The system comprises a micron-sized magnetic bead attached to the free end of the viral DNA, a magnet and a bright-field microscope. We show that the phi29 DNA packaging activity can be observed and dynamically analyzed at the single molecular level in bright field with a relatively simple system. With this system we also visually demonstrate the phi29 motor transporting a cargo 10 000 times the viral size.

Entities:  

Year:  2008        PMID: 19529792      PMCID: PMC2684695          DOI: 10.1063/1.3000606

Source DB:  PubMed          Journal:  Appl Phys Lett        ISSN: 0003-6951            Impact factor:   3.791


  21 in total

1.  Mechanism of force generation of a viral DNA packaging motor.

Authors:  Yann R Chemla; K Aathavan; Jens Michaelis; Shelley Grimes; Paul J Jardine; Dwight L Anderson; Carlos Bustamante
Journal:  Cell       Date:  2005-09-09       Impact factor: 41.582

2.  Automatic tracking of individual fluorescence particles: application to the study of chromosome dynamics.

Authors:  Daniel Sage; Franck R Neumann; Florence Hediger; Susan M Gasser; Michael Unser
Journal:  IEEE Trans Image Process       Date:  2005-09       Impact factor: 10.856

Review 3.  RNA nanotechnology: engineering, assembly and applications in detection, gene delivery and therapy.

Authors:  Peixuan Guo
Journal:  J Nanosci Nanotechnol       Date:  2005-12

4.  Overstretching B-DNA: the elastic response of individual double-stranded and single-stranded DNA molecules.

Authors:  S B Smith; Y Cui; C Bustamante
Journal:  Science       Date:  1996-02-09       Impact factor: 47.728

5.  A defined system for in vitro packaging of DNA-gp3 of the Bacillus subtilis bacteriophage phi 29.

Authors:  P Guo; S Grimes; D Anderson
Journal:  Proc Natl Acad Sci U S A       Date:  1986-05       Impact factor: 11.205

6.  Prohead and DNA-gp3-dependent ATPase activity of the DNA packaging protein gp16 of bacteriophage phi 29.

Authors:  P Guo; C Peterson; D Anderson
Journal:  J Mol Biol       Date:  1987-09-20       Impact factor: 5.469

7.  The proximate 5' and 3' ends of the 120-base viral RNA (pRNA) are crucial for the packaging of bacteriophage phi 29 DNA.

Authors:  C Zhang; C S Lee; P Guo
Journal:  Virology       Date:  1994-05-15       Impact factor: 3.616

8.  Gene cloning, purification, and stoichiometry quantification of phi29 anti-receptor gp12 with potential use as special ligand for gene delivery.

Authors:  Songchuan Guo; Dan Shu; Martha N Simon; Peixuan Guo
Journal:  Gene       Date:  2003-10-02       Impact factor: 3.688

9.  Genetic analysis of bacteriophage phi29 of Bacillus subtilis: mapping of the cistrons coding for structural proteins.

Authors:  B E Reilly; M E Tosi; D L Anderson
Journal:  J Virol       Date:  1975-10       Impact factor: 5.103

10.  Experimental test of connector rotation during DNA packaging into bacteriophage phi29 capsids.

Authors:  Thorsten Hugel; Jens Michaelis; Craig L Hetherington; Paul J Jardine; Shelley Grimes; Jessica M Walter; Wayne Falk; Dwight L Anderson; Carlos Bustamante
Journal:  PLoS Biol       Date:  2007-03       Impact factor: 8.029

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  13 in total

Review 1.  Biological Nanomotors with a Revolution, Linear, or Rotation Motion Mechanism.

Authors:  Peixuan Guo; Hiroyuki Noji; Christopher M Yengo; Zhengyi Zhao; Ian Grainge
Journal:  Microbiol Mol Biol Rev       Date:  2016-01-27       Impact factor: 11.056

2.  Biophysical studies reveal new evidence for one-way revolution mechanism of bacteriophage ϕ29 DNA packaging motor.

Authors:  Peixuan Guo
Journal:  Biophys J       Date:  2014-05-06       Impact factor: 4.033

3.  Construction of Asymmetrical Hexameric Biomimetic Motors with Continuous Single-Directional Motion by Sequential Coordination.

Authors:  Zhengyi Zhao; Hui Zhang; Dan Shu; Carlo Montemagno; Baoquan Ding; Jingyuan Li; Peixuan Guo
Journal:  Small       Date:  2016-10-06       Impact factor: 13.281

4.  Three reversible and controllable discrete steps of channel gating of a viral DNA packaging motor.

Authors:  Jia Geng; Huaming Fang; Farzin Haque; Le Zhang; Peixuan Guo
Journal:  Biomaterials       Date:  2011-07-31       Impact factor: 12.479

Review 5.  Construction of bacteriophage phi29 DNA packaging motor and its applications in nanotechnology and therapy.

Authors:  Tae Jin Lee; Chad Schwartz; Peixuan Guo
Journal:  Ann Biomed Eng       Date:  2009-06-04       Impact factor: 3.934

Review 6.  Common mechanisms of DNA translocation motors in bacteria and viruses using one-way revolution mechanism without rotation.

Authors:  Peixuan Guo; Zhengyi Zhao; Jeannie Haak; Shaoying Wang; Dong Wu; Bing Meng; Tao Weitao
Journal:  Biotechnol Adv       Date:  2014 Jul-Aug       Impact factor: 14.227

7.  Construction of a laser combiner for dual fluorescent single molecule imaging of pRNA of phi29 DNA packaging motor.

Authors:  Hui Zhang; Dan Shu; Mark Browne; Peixuan Guo
Journal:  Biomed Microdevices       Date:  2010-02       Impact factor: 2.838

8.  Engineering of the fluorescent-energy-conversion arm of phi29 DNA packaging motor for single-molecule studies.

Authors:  Tae Jin Lee; Hui Zhang; Chun-Li Chang; Cagri Savran; Peixuan Guo
Journal:  Small       Date:  2009-11       Impact factor: 13.281

Review 9.  Discovery of a new motion mechanism of biomotors similar to the earth revolving around the sun without rotation.

Authors:  Peixuan Guo; Chad Schwartz; Jeannie Haak; Zhengyi Zhao
Journal:  Virology       Date:  2013-08-27       Impact factor: 3.616

10.  Mechanism of one-way traffic of hexameric phi29 DNA packaging motor with four electropositive relaying layers facilitating antiparallel revolution.

Authors:  Zhengyi Zhao; Emil Khisamutdinov; Chad Schwartz; Peixuan Guo
Journal:  ACS Nano       Date:  2013-03-26       Impact factor: 15.881

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