Literature DB >> 19517238

Boolean modeling of neural systems with point-process inputs and outputs. Part I: theory and simulations.

Vasilis Z Marmarelis1, Theodoros P Zanos, Theodore W Berger.   

Abstract

This paper presents a new modeling approach for neural systems with point-process (spike) inputs and outputs that utilizes Boolean operators (i.e. modulo 2 multiplication and addition that correspond to the logical AND and OR operations respectively, as well as the AND_NOT logical operation representing inhibitory effects). The form of the employed mathematical models is akin to a "Boolean-Volterra" model that contains the product terms of all relevant input lags in a hierarchical order, where terms of order higher than first represent nonlinear interactions among the various lagged values of each input point-process or among lagged values of various inputs (if multiple inputs exist) as they reflect on the output. The coefficients of this Boolean-Volterra model are also binary variables that indicate the presence or absence of the respective term in each specific model/system. Simulations are used to explore the properties of such models and the feasibility of their accurate estimation from short data-records in the presence of noise (i.e. spurious spikes). The results demonstrate the feasibility of obtaining reliable estimates of such models, with excitatory and inhibitory terms, in the presence of considerable noise (spurious spikes) in the outputs and/or the inputs in a computationally efficient manner. A pilot application of this approach to an actual neural system is presented in the companion paper (Part II).

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Year:  2009        PMID: 19517238      PMCID: PMC2917726          DOI: 10.1007/s10439-009-9736-8

Source DB:  PubMed          Journal:  Ann Biomed Eng        ISSN: 0090-6964            Impact factor:   3.934


  19 in total

1.  An efficient method for studying short-term plasticity with random impulse train stimuli.

Authors:  Ghassan Gholmieh; Spiros Courellis; Vasilis Marmarelis; Theodore Berger
Journal:  J Neurosci Methods       Date:  2002-12-15       Impact factor: 2.390

2.  Scalar equations for synchronous Boolean networks with biological applications.

Authors:  Christopher Farrow; Jack Heidel; John Maloney; Jim Rogers
Journal:  IEEE Trans Neural Netw       Date:  2004-03

Review 3.  Signal transformation and coding in neural systems.

Authors:  V Z Marmarelis
Journal:  IEEE Trans Biomed Eng       Date:  1989-01       Impact factor: 4.538

4.  Nonlinear dynamic modeling of spike train transformations for hippocampal-cortical prostheses.

Authors:  Dong Song; Rosa H M Chan; Vasilis Z Marmarelis; Robert E Hampson; Sam A Deadwyler; Theodore W Berger
Journal:  IEEE Trans Biomed Eng       Date:  2007-06       Impact factor: 4.538

5.  A multi-input modeling approach to quantify hippocampal nonlinear dynamic transformations.

Authors:  Theodoros P Zanos; Spiros H Courellis; Robert E Hampson; Sam A Deadwyler; Vasilis Z Marmarelis; Theodore W Berger
Journal:  Conf Proc IEEE Eng Med Biol Soc       Date:  2006

6.  Firing-rate response of linear and nonlinear integrate-and-fire neurons to modulated current-based and conductance-based synaptic drive.

Authors:  Magnus J E Richardson
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2007-08-20

7.  Detection and classification of neurotoxins using a novel short-term plasticity quantification method.

Authors:  Ghassan Gholmieh; Spiros Courellis; Saman Fakheri; Eric Cheung; Vasilis Marmarelis; Michel Baudry; Theodore Berger
Journal:  Biosens Bioelectron       Date:  2003-10-15       Impact factor: 10.618

8.  Nonlinear systems analysis of the hippocampal perforant path-dentate projection. II. Effects of random impulse train stimulation.

Authors:  T W Berger; J L Eriksson; D A Ciarolla; R J Sclabassi
Journal:  J Neurophysiol       Date:  1988-09       Impact factor: 2.714

9.  Nonlinear modeling of causal interrelationships in neuronal ensembles.

Authors:  Theodoros P Zanos; Spiros H Courellis; Theodore W Berger; Robert E Hampson; Sam A Deadwyler; Vasilis Z Marmarelis
Journal:  IEEE Trans Neural Syst Rehabil Eng       Date:  2008-08       Impact factor: 3.802

Review 10.  Playing the devil's advocate: is the Hodgkin-Huxley model useful?

Authors:  Claude Meunier; Idan Segev
Journal:  Trends Neurosci       Date:  2002-11       Impact factor: 13.837

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  5 in total

1.  Hippocampal closed-loop modeling and implications for seizure stimulation design.

Authors:  Roman A Sandler; Dong Song; Robert E Hampson; Sam A Deadwyler; Theodore W Berger; Vasilis Z Marmarelis
Journal:  J Neural Eng       Date:  2015-09-10       Impact factor: 5.379

2.  A nonlinear model for hippocampal cognitive prosthesis: memory facilitation by hippocampal ensemble stimulation.

Authors:  Robert E Hampson; Dong Song; Rosa H M Chan; Andrew J Sweatt; Mitchell R Riley; Gregory A Gerhardt; Dae C Shin; Vasilis Z Marmarelis; Theodore W Berger; Samuel A Deadwyler
Journal:  IEEE Trans Neural Syst Rehabil Eng       Date:  2012-03       Impact factor: 3.802

3.  Nonlinear modeling of dynamic interactions within neuronal ensembles using Principal Dynamic Modes.

Authors:  Vasilis Z Marmarelis; Dae C Shin; Dong Song; Robert E Hampson; Sam A Deadwyler; Theodore W Berger
Journal:  J Comput Neurosci       Date:  2012-07-20       Impact factor: 1.621

4.  System identification of point-process neural systems using probability based Volterra kernels.

Authors:  Roman A Sandler; Samuel A Deadwyler; Robert E Hampson; Dong Song; Theodore W Berger; Vasilis Z Marmarelis
Journal:  J Neurosci Methods       Date:  2014-12-03       Impact factor: 2.390

5.  On parsing the neural code in the prefrontal cortex of primates using principal dynamic modes.

Authors:  V Z Marmarelis; D C Shin; D Song; R E Hampson; S A Deadwyler; T W Berger
Journal:  J Comput Neurosci       Date:  2013-08-09       Impact factor: 1.621

  5 in total

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