Literature DB >> 17554824

Nonlinear dynamic modeling of spike train transformations for hippocampal-cortical prostheses.

Dong Song1, Rosa H M Chan, Vasilis Z Marmarelis, Robert E Hampson, Sam A Deadwyler, Theodore W Berger.   

Abstract

One of the fundamental principles of cortical brain regions, including the hippocampus, is that information is represented in the ensemble firing of populations of neurons, i.e., spatio-temporal patterns of electrophysiological activity. The hippocampus has long been known to be responsible for the formation of declarative, or fact-based, memories. Damage to the hippocampus disrupts the propagation of spatio-temporal patterns of activity through hippocampal internal circuitry, resulting in a severe anterograde amnesia. Developing a neural prosthesis for the damaged hippocampus requires restoring this multiple-input, multiple-output transformation of spatio-temporal patterns of activity. Because the mechanisms underlying synaptic transmission and generation of electrical activity in neurons are inherently nonlinear, any such prosthesis must be based on a nonlinear multiple-input, multiple-output model. In this paper, we have formulated the transformational process of multi-site propagation of spike activity between two subregions of the hippocampus (CA3 and CA1) as the identification of a multiple-input, multiple-output (MIMO) system, and proposed that it can be decomposed into a series of multiple-input, single-output (MISO) systems. Each MISO system is modeled as a physiologically plausible structure that consists of 1) linear/nonlinear feedforward Volterra kernels modeling synaptic transmission and dendritic integration, 2) a linear feedback Volterra kernel modeling spike-triggered after-potentials, 3) a threshold for spike generation, 4) a summation process for somatic integration, and 5) a noise term representing intrinsic neuronal noise and the contributions of unobserved inputs. Input and output spike trains were recorded from hippocampal CA3 and CA1 regions of rats performing a spatial delayed-nonmatch-to-sample memory task that requires normal hippocampal function. Kernels were expanded with Laguerre basis functions and estimated using a maximum-likelihood method. Complexity of the feedforward kernel was progressively increased to capture higher-order system nonlinear dynamics. Results showed higher prediction accuracies as kernel complexity increased. Self-kernels describe the nonlinearities within each input. Cross-kernels capture the nonlinear interaction between inputs. Second- and third-order nonlinear models were found to successfully predict the CA1 output spike distribution based on CA3 input spike trains. First-order, linear models were shown to be insufficient.

Entities:  

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Year:  2007        PMID: 17554824     DOI: 10.1109/TBME.2007.891948

Source DB:  PubMed          Journal:  IEEE Trans Biomed Eng        ISSN: 0018-9294            Impact factor:   4.538


  43 in total

1.  Understanding spike-triggered covariance using Wiener theory for receptive field identification.

Authors:  Roman A Sandler; Vasilis Z Marmarelis
Journal:  J Vis       Date:  2015       Impact factor: 2.240

2.  Hippocampal closed-loop modeling and implications for seizure stimulation design.

Authors:  Roman A Sandler; Dong Song; Robert E Hampson; Sam A Deadwyler; Theodore W Berger; Vasilis Z Marmarelis
Journal:  J Neural Eng       Date:  2015-09-10       Impact factor: 5.379

3.  Parametric and non-parametric modeling of short-term synaptic plasticity. Part I: Computational study.

Authors:  Dong Song; Vasilis Z Marmarelis; Theodore W Berger
Journal:  J Comput Neurosci       Date:  2008-05-28       Impact factor: 1.621

4.  Boolean modeling of neural systems with point-process inputs and outputs. Part I: theory and simulations.

Authors:  Vasilis Z Marmarelis; Theodoros P Zanos; Theodore W Berger
Journal:  Ann Biomed Eng       Date:  2009-06-11       Impact factor: 3.934

5.  Facilitation and restoration of cognitive function in primate prefrontal cortex by a neuroprosthesis that utilizes minicolumn-specific neural firing.

Authors:  Robert E Hampson; Greg A Gerhardt; Vasilis Marmarelis; Dong Song; Ioan Opris; Lucas Santos; Theodore W Berger; Sam A Deadwyler
Journal:  J Neural Eng       Date:  2012-09-13       Impact factor: 5.379

6.  A nonlinear autoregressive Volterra model of the Hodgkin-Huxley equations.

Authors:  Steffen E Eikenberry; Vasilis Z Marmarelis
Journal:  J Comput Neurosci       Date:  2012-08-10       Impact factor: 1.621

7.  A cortical neural prosthesis for restoring and enhancing memory.

Authors:  Theodore W Berger; Robert E Hampson; Dong Song; Anushka Goonawardena; Vasilis Z Marmarelis; Sam A Deadwyler
Journal:  J Neural Eng       Date:  2011-06-15       Impact factor: 5.379

8.  Facilitation of memory encoding in primate hippocampus by a neuroprosthesis that promotes task-specific neural firing.

Authors:  Robert E Hampson; Dong Song; Ioan Opris; Lucas M Santos; Dae C Shin; Greg A Gerhardt; Vasilis Z Marmarelis; Theodore W Berger; Sam A Deadwyler
Journal:  J Neural Eng       Date:  2013-11-12       Impact factor: 5.379

9.  Design of optimal stimulation patterns for neuronal ensembles based on Volterra-type hierarchical modeling.

Authors:  V Z Marmarelis; D C Shin; R E Hampson; S A Deadwyler; D Song; T W Berger
Journal:  J Neural Eng       Date:  2012-10-17       Impact factor: 5.379

10.  Consistent recovery of sensory stimuli encoded with MIMO neural circuits.

Authors:  Aurel A Lazar; Eftychios A Pnevmatikakis
Journal:  Comput Intell Neurosci       Date:  2009-09-22
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