Literature DB >> 19506850

Antibiotic translocation through membrane channels: temperature-dependent ion current fluctuation for catching the fast events.

Kozhinjampara R Mahendran1, Catalin Chimerel, Tivadar Mach, Mathias Winterhalter.   

Abstract

Temperature-dependent facilitated permeation of antibiotics through membrane channels was investigated. Here we reconstituted single OmpF trimers from the outer membrane of Escherichia coli (E. coli) into a planar lipid bilayer. The penetration of ampicillin through OmpF causes fluctuation in the ion current, and analysis of the fluctuations at different temperatures allows us to determine the mode of permeation. The residence time of the drug inside the channel decays strongly with temperature, reaching the resolution limit of the instrument at 30 degrees C. The number of events increases exponentially with temperature up to 30 degrees C and then gradually decreases as temperature increases. At room temperature, we observe about 25 events per second per monomer of the trimeric channel and an extrapolation to 37 degrees C gives roughly 50 events. The activation energy for ampicillin translocation through OmpF is estimated to be around 13 kT. Temperature-dependent study gives new insights into the faster translocation of small substrates through biological nanopores.

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Year:  2009        PMID: 19506850     DOI: 10.1007/s00249-009-0495-0

Source DB:  PubMed          Journal:  Eur Biophys J        ISSN: 0175-7571            Impact factor:   1.733


  28 in total

1.  Role of charged residues at the OmpF porin channel constriction probed by mutagenesis and simulation.

Authors:  P S Phale; A Philippsen; C Widmer; V P Phale; J P Rosenbusch; T Schirmer
Journal:  Biochemistry       Date:  2001-05-29       Impact factor: 3.162

2.  Alteration of pore properties of Escherichia coli OmpF induced by mutation of key residues in anti-loop 3 region.

Authors:  Jérôme Bredin; Nathalie Saint; Monique Malléa; Emmanuelle Dé; Gérard Molle; Jean-Marie Pagès; Valérie Simonet
Journal:  Biochem J       Date:  2002-05-01       Impact factor: 3.857

3.  Residue ionization and ion transport through OmpF channels.

Authors:  Ekaterina M Nestorovich; Tatiana K Rostovtseva; Sergey M Bezrukov
Journal:  Biophys J       Date:  2003-12       Impact factor: 4.033

Review 4.  Molecular basis of bacterial outer membrane permeability revisited.

Authors:  Hiroshi Nikaido
Journal:  Microbiol Mol Biol Rev       Date:  2003-12       Impact factor: 11.056

5.  Temperature-responsive protein pores.

Authors:  Yuni Jung; Hagan Bayley; Liviu Movileanu
Journal:  J Am Chem Soc       Date:  2006-11-29       Impact factor: 15.419

6.  DNA translocation governed by interactions with solid-state nanopores.

Authors:  Meni Wanunu; Jason Sutin; Ben McNally; Andrew Chow; Amit Meller
Journal:  Biophys J       Date:  2008-08-15       Impact factor: 4.033

7.  Partitioning of differently sized poly(ethylene glycol)s into OmpF porin.

Authors:  Tatiana K Rostovtseva; Ekaterina M Nestorovich; Sergey M Bezrukov
Journal:  Biophys J       Date:  2002-01       Impact factor: 4.033

8.  Interaction of zwitterionic penicillins with the OmpF channel facilitates their translocation.

Authors:  Christophe Danelon; Ekaterina M Nestorovich; Mathias Winterhalter; Matteo Ceccarelli; Sergey M Bezrukov
Journal:  Biophys J       Date:  2005-12-09       Impact factor: 4.033

9.  Molecular origin of the cation selectivity in OmpF porin: single channel conductances vs. free energy calculation.

Authors:  Christophe Danelon; Atsushi Suenaga; Mathias Winterhalter; Ichiro Yamato
Journal:  Biophys Chem       Date:  2003-07-01       Impact factor: 2.352

10.  Facilitated permeation of antibiotics across membrane channels--interaction of the quinolone moxifloxacin with the OmpF channel.

Authors:  Tivadar Mach; Patricia Neves; Enrico Spiga; Helge Weingart; Mathias Winterhalter; Paolo Ruggerone; Matteo Ceccarelli; Paula Gameiro
Journal:  J Am Chem Soc       Date:  2008-09-13       Impact factor: 15.419

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  20 in total

1.  Protein translocation through Tom40: kinetics of peptide release.

Authors:  Kozhinjampara R Mahendran; Mercedes Romero-Ruiz; Andrea Schlösinger; Mathias Winterhalter; Stephan Nussberger
Journal:  Biophys J       Date:  2012-01-03       Impact factor: 4.033

2.  Interactions of mitochondrial presequence peptides with the mitochondrial outer membrane preprotein translocase TOM.

Authors:  Mercedes Romero-Ruiz; Kozhinjampara R Mahendran; Reiner Eckert; Mathias Winterhalter; Stephan Nussberger
Journal:  Biophys J       Date:  2010-08-04       Impact factor: 4.033

3.  Bridging timescales and length scales: from macroscopic flux to the molecular mechanism of antibiotic diffusion through porins.

Authors:  Eric Hajjar; Kozhinjampara R Mahendran; Amit Kumar; Andrey Bessonov; Mircea Petrescu; Helge Weingart; Paolo Ruggerone; Mathias Winterhalter; Matteo Ceccarelli
Journal:  Biophys J       Date:  2010-02-17       Impact factor: 4.033

4.  Protein reconstitution into freestanding planar lipid membranes for electrophysiological characterization.

Authors:  Thomas Gutsmann; Thomas Heimburg; Ulrich Keyser; Kozhinjampara R Mahendran; Mathias Winterhalter
Journal:  Nat Protoc       Date:  2014-12-31       Impact factor: 13.491

5.  Peptide translocation through the mesoscopic channel: binding kinetics at the single molecule level.

Authors:  Usha Lamichhane; Tuhidul Islam; Sonal Prasad; Helge Weingart; Kozhinjampara R Mahendran; Mathias Winterhalter
Journal:  Eur Biophys J       Date:  2012-12-29       Impact factor: 1.733

6.  Chitoporin from Vibrio harveyi, a channel with exceptional sugar specificity.

Authors:  Wipa Suginta; Watcharin Chumjan; Kozhinjampara R Mahendran; Albert Schulte; Mathias Winterhalter
Journal:  J Biol Chem       Date:  2013-02-27       Impact factor: 5.157

7.  Comparing the temperature-dependent conductance of the two structurally similar E. coli porins OmpC and OmpF.

Authors:  István Biró; Soroosh Pezeshki; Helge Weingart; Mathias Winterhalter; Ulrich Kleinekathöfer
Journal:  Biophys J       Date:  2010-05-19       Impact factor: 4.033

8.  Differential detergent extraction of mycobacterium marinum cell envelope proteins identifies an extensively modified threonine-rich outer membrane protein with channel activity.

Authors:  Aniek D van der Woude; Kozhinjampara R Mahendran; Roy Ummels; Sander R Piersma; Thang V Pham; Connie R Jiménez; Karin de Punder; Nicole N van der Wel; Mathias Winterhalter; Joen Luirink; Wilbert Bitter; Edith N G Houben
Journal:  J Bacteriol       Date:  2013-03-01       Impact factor: 3.490

9.  Fast translocation of proteins through solid state nanopores.

Authors:  Calin Plesa; Stefan W Kowalczyk; Ruben Zinsmeester; Alexander Y Grosberg; Yitzhak Rabin; Cees Dekker
Journal:  Nano Lett       Date:  2013-01-29       Impact factor: 11.189

10.  Role of the Outer Membrane and Porins in Susceptibility of β-Lactamase-Producing Enterobacteriaceae to Ceftazidime-Avibactam.

Authors:  Jean-Marie Pagès; Sabine Peslier; Thomas A Keating; Jean-Philippe Lavigne; Wright W Nichols
Journal:  Antimicrob Agents Chemother       Date:  2015-12-14       Impact factor: 5.191

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