Literature DB >> 19506761

Stochastic bifurcation, slow fluctuations, and bistability as an origin of biochemical complexity.

Hong Qian1, Pei-Zhe Shi, Jianhua Xing.   

Abstract

We present a simple, unifying theory for stochastic biochemical systems with multiple time-scale dynamics that exhibit noise-induced bistability in an open-chemical environment, while the corresponding macroscopic reaction is unistable. Nonlinear stochastic biochemical systems like these are fundamentally different from classical systems in equilibrium or near-equilibrium steady state whose fluctuations are unimodal following Einstein-Onsager-Lax-Keizer theory. We show that noise-induced bistability in general arises from slow fluctuations, and a pitchfork bifurcation occurs as the rate of fluctuations decreases. Since an equilibrium distribution, due to detailed balance, has to be independent of changes in time-scale, the bifurcation is necessarily a driven phenomenon. As examples, we analyze three biochemical networks of currently interest: self-regulating gene, stochastic binary decision, and phosphorylation-dephosphorylation cycle with fluctuating kinase. The implications of bistability to biochemical complexity are discussed.

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Year:  2009        PMID: 19506761     DOI: 10.1039/b900335p

Source DB:  PubMed          Journal:  Phys Chem Chem Phys        ISSN: 1463-9076            Impact factor:   3.676


  22 in total

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5.  Dichotomous noise models of gene switches.

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6.  Optimal homeostasis necessitates bistable control.

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7.  Stochastic bistability and bifurcation in a mesoscopic signaling system with autocatalytic kinase.

Authors:  Lisa M Bishop; Hong Qian
Journal:  Biophys J       Date:  2010-01-06       Impact factor: 4.033

8.  Stochastic bimodalities in deterministically monostable reversible chemical networks due to network topology reduction.

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9.  Probabilistic control of HIV latency and transactivation by the Tat gene circuit.

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10.  Temperature control of fimbriation circuit switch in uropathogenic Escherichia coli: quantitative analysis via automated model abstraction.

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Journal:  PLoS Comput Biol       Date:  2010-03-26       Impact factor: 4.475

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