Literature DB >> 19502405

Biochemical evidence for a timing mechanism in prochlorococcus.

Ilka M Axmann1, Ulf Dühring, Luiza Seeliger, Anne Arnold, Jens T Vanselow, Achim Kramer, Annegret Wilde.   

Abstract

Organisms coordinate biological activities into daily cycles using an internal circadian clock. The circadian oscillator proteins KaiA, KaiB, and KaiC are widely believed to underlie 24-h oscillations of gene expression in cyanobacteria. However, a group of very abundant cyanobacteria, namely, marine Prochlorococcus species, lost the third oscillator component, KaiA, during evolution. We demonstrate here that the remaining Kai proteins fulfill their known biochemical functions, although KaiC is hyperphosphorylated by default in this system. These data provide biochemical support for the observed evolutionary reduction of the clock locus in Prochlorococcus and are consistent with a model in which a mechanism that is less robust than the well-characterized KaiABC protein clock of Synechococcus is sufficient for biological timing in the very stable environment that Prochlorococcus inhabits.

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Year:  2009        PMID: 19502405      PMCID: PMC2725622          DOI: 10.1128/JB.00419-09

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  26 in total

1.  Cell cycle regulation by light in Prochlorococcus strains.

Authors:  S Jacquet; F Partensky; D Marie; R Casotti; D Vaulot
Journal:  Appl Environ Microbiol       Date:  2001-02       Impact factor: 4.792

2.  Origin and evolution of circadian clock genes in prokaryotes.

Authors:  Volodymyr Dvornyk; Oxana Vinogradova; Eviatar Nevo
Journal:  Proc Natl Acad Sci U S A       Date:  2003-02-25       Impact factor: 11.205

3.  LdpA: a component of the circadian clock senses redox state of the cell.

Authors:  Natalia B Ivleva; Matthew R Bramlett; Paul A Lindahl; Susan S Golden
Journal:  EMBO J       Date:  2005-03-10       Impact factor: 11.598

4.  Reconstitution of circadian oscillation of cyanobacterial KaiC phosphorylation in vitro.

Authors:  Masato Nakajima; Keiko Imai; Hiroshi Ito; Taeko Nishiwaki; Yoriko Murayama; Hideo Iwasaki; Tokitaka Oyama; Takao Kondo
Journal:  Science       Date:  2005-04-15       Impact factor: 47.728

5.  An improved assay for nanomole amounts of inorganic phosphate.

Authors:  P A Lanzetta; L J Alvarez; P S Reinach; O A Candia
Journal:  Anal Biochem       Date:  1979-11-15       Impact factor: 3.365

6.  ATPase activity of KaiC determines the basic timing for circadian clock of cyanobacteria.

Authors:  Kazuki Terauchi; Yohko Kitayama; Taeko Nishiwaki; Kumiko Miwa; Yoriko Murayama; Tokitaka Oyama; Takao Kondo
Journal:  Proc Natl Acad Sci U S A       Date:  2007-09-27       Impact factor: 11.205

7.  A sequential program of dual phosphorylation of KaiC as a basis for circadian rhythm in cyanobacteria.

Authors:  Taeko Nishiwaki; Yoshinori Satomi; Yohko Kitayama; Kazuki Terauchi; Reiko Kiyohara; Toshifumi Takao; Takao Kondo
Journal:  EMBO J       Date:  2007-08-23       Impact factor: 11.598

8.  Expression of a gene cluster kaiABC as a circadian feedback process in cyanobacteria.

Authors:  M Ishiura; S Kutsuna; S Aoki; H Iwasaki; C R Andersson; A Tanabe; S S Golden; C H Johnson; T Kondo
Journal:  Science       Date:  1998-09-04       Impact factor: 47.728

9.  Regulation of circadian clock gene expression by phosphorylation states of KaiC in cyanobacteria.

Authors:  Yoriko Murayama; Tokitaka Oyama; Takao Kondo
Journal:  J Bacteriol       Date:  2007-12-28       Impact factor: 3.490

10.  Patterns and implications of gene gain and loss in the evolution of Prochlorococcus.

Authors:  Gregory C Kettler; Adam C Martiny; Katherine Huang; Jeremy Zucker; Maureen L Coleman; Sebastien Rodrigue; Feng Chen; Alla Lapidus; Steven Ferriera; Justin Johnson; Claudia Steglich; George M Church; Paul Richardson; Sallie W Chisholm
Journal:  PLoS Genet       Date:  2007-12       Impact factor: 5.917

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  25 in total

1.  Circadian input kinases and their homologs in cyanobacteria: evolutionary constraints versus architectural diversification.

Authors:  Ivan Baca; Daniel Sprockett; Volodymyr Dvornyk
Journal:  J Mol Evol       Date:  2010-05-01       Impact factor: 2.395

Review 2.  Timing the day: what makes bacterial clocks tick?

Authors:  Carl Hirschie Johnson; Chi Zhao; Yao Xu; Tetsuya Mori
Journal:  Nat Rev Microbiol       Date:  2017-02-20       Impact factor: 60.633

3.  The rolex and the hourglass: a simplified circadian clock in prochlorococcus?

Authors:  Conrad W Mullineaux; Ralf Stanewsky
Journal:  J Bacteriol       Date:  2009-06-26       Impact factor: 3.490

4.  Response of Prochlorococcus to varying CO2:O2 ratios.

Authors:  Sarah C Bagby; Sallie W Chisholm
Journal:  ISME J       Date:  2015-04-07       Impact factor: 10.302

5.  Molecular dynamics simulations of nucleotide release from the circadian clock protein KaiC reveal atomic-resolution functional insights.

Authors:  Lu Hong; Bodhi P Vani; Erik H Thiede; Michael J Rust; Aaron R Dinner
Journal:  Proc Natl Acad Sci U S A       Date:  2018-11-15       Impact factor: 11.205

Review 6.  Metabolic compensation and circadian resilience in prokaryotic cyanobacteria.

Authors:  Carl Hirschie Johnson; Martin Egli
Journal:  Annu Rev Biochem       Date:  2014       Impact factor: 23.643

7.  Single mutations in sasA enable a simpler ΔcikA gene network architecture with equivalent circadian properties.

Authors:  Ryan K Shultzaberger; Joseph S Boyd; Takeo Katsuki; Susan S Golden; Ralph J Greenspan
Journal:  Proc Natl Acad Sci U S A       Date:  2014-11-10       Impact factor: 11.205

Review 8.  Simplicity and complexity in the cyanobacterial circadian clock mechanism.

Authors:  Guogang Dong; Yong-Ick Kim; Susan S Golden
Journal:  Curr Opin Genet Dev       Date:  2010-10-09       Impact factor: 5.578

9.  Torn apart and reunited: impact of a heterotroph on the transcriptome of Prochlorococcus.

Authors:  Steven J Biller; Allison Coe; Sallie W Chisholm
Journal:  ISME J       Date:  2016-06-03       Impact factor: 10.302

Review 10.  Giving Time Purpose: The Synechococcus elongatus Clock in a Broader Network Context.

Authors:  Ryan K Shultzaberger; Joseph S Boyd; Spencer Diamond; Ralph J Greenspan; Susan S Golden
Journal:  Annu Rev Genet       Date:  2015-10-05       Impact factor: 16.830

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