Literature DB >> 19499541

MOLCAS 7: the next generation.

Francesco Aquilante1, Luca De Vico, Nicolas Ferré, Giovanni Ghigo, Per-Ake Malmqvist, Pavel Neogrády, Thomas Bondo Pedersen, Michal Pitonák, Markus Reiher, Björn O Roos, Luis Serrano-Andrés, Miroslav Urban, Valera Veryazov, Roland Lindh.   

Abstract

Some of the new unique features of the MOLCAS quantum chemistry package version 7 are presented in this report. In particular, the Cholesky decomposition method applied to some quantum chemical methods is described. This approach is used both in the context of a straight forward approximation of the two-electron integrals and in the generation of so-called auxiliary basis sets. The article describes how the method is implemented for most known wave functions models: self-consistent field, density functional theory, 2nd order perturbation theory, complete-active space self-consistent field multiconfigurational reference 2nd order perturbation theory, and coupled-cluster methods. The report further elaborates on the implementation of a restricted-active space self-consistent field reference function in conjunction with 2nd order perturbation theory. The average atomic natural orbital basis for relativistic calculations, covering the whole periodic table, are described and associated unique properties are demonstrated. Furthermore, the use of the arbitrary order Douglas-Kroll-Hess transformation for one-component relativistic calculations and its implementation are discussed. This section especially focuses on the implementation of the so-called picture-change-free atomic orbital property integrals. Moreover, the ElectroStatic Potential Fitted scheme, a version of a quantum mechanics/molecular mechanics hybrid method implemented in MOLCAS, is described and discussed. Finally, the report discusses the use of the MOLCAS package for advanced studies of photo chemical phenomena and the usefulness of the algorithms for constrained geometry optimization in MOLCAS in association with such studies. Copyright 2009 Wiley Periodicals, Inc.

Mesh:

Year:  2010        PMID: 19499541     DOI: 10.1002/jcc.21318

Source DB:  PubMed          Journal:  J Comput Chem        ISSN: 0192-8651            Impact factor:   3.376


  97 in total

1.  Probing amyloid fibril growth by two-dimensional near-ultraviolet spectroscopy.

Authors:  Jun Jiang; Shaul Mukamel
Journal:  J Phys Chem B       Date:  2011-04-25       Impact factor: 2.991

2.  Molecular hydrogen interacts more strongly when rotationally excited at low temperatures leading to faster reactions.

Authors:  Yuval Shagam; Ayelet Klein; Wojciech Skomorowski; Renjie Yun; Vitali Averbukh; Christiane P Koch; Edvardas Narevicius
Journal:  Nat Chem       Date:  2015-10-05       Impact factor: 24.427

3.  Molecular bases for the selection of the chromophore of animal rhodopsins.

Authors:  Hoi Ling Luk; Federico Melaccio; Silvia Rinaldi; Samer Gozem; Massimo Olivucci
Journal:  Proc Natl Acad Sci U S A       Date:  2015-11-25       Impact factor: 11.205

4.  The preferred conformation of dipeptides in the context of biosynthesis.

Authors:  Robert P Bywater; Valera Veryazov
Journal:  Naturwissenschaften       Date:  2013-08-13

5.  Straightforward access to mono- and bis-cycloplatinated helicenes that display circularly polarized phosphorescence using crystallization resolution methods.

Authors:  Chengshuo Shen; Emmanuel Anger; Monika Srebro; Nicolas Vanthuyne; Kirandeep K Deol; Truman D Jefferson; Gilles Muller; J A Gareth Williams; Loïc Toupet; Christian Roussel; Jochen Autschbach; Régis Réau; Jeanne Crassous
Journal:  Chem Sci       Date:  2014-05-01       Impact factor: 9.825

6.  Cr L-Edge X-ray Absorption Spectroscopy of CrIII(acac)3 in Solution with Measured and Calculated Absolute Absorption Cross Sections.

Authors:  Markus Kubin; Meiyuan Guo; Maria Ekimova; Erik Källman; Jan Kern; Vittal K Yachandra; Junko Yano; Erik T J Nibbering; Marcus Lundberg; Philippe Wernet
Journal:  J Phys Chem B       Date:  2018-07-13       Impact factor: 2.991

7.  Calculation of Heats of Formation for Zn Complexes: Comparison of Density Functional Theory, Second Order Perturbation Theory, Coupled-Cluster and Complete Active Space Methods.

Authors:  Michael N Weaver; Kenneth M Merz; Dongxia Ma; Hyun Jung Kim; Laura Gagliardi
Journal:  J Chem Theory Comput       Date:  2013-12-10       Impact factor: 6.006

8.  Unusual structure, bonding and properties in a californium borate.

Authors:  Matthew J Polinski; Edward B Garner; Rémi Maurice; Nora Planas; Jared T Stritzinger; T Gannon Parker; Justin N Cross; Thomas D Green; Evgeny V Alekseev; Shelley M Van Cleve; Wulf Depmeier; Laura Gagliardi; Michael Shatruk; Kenneth L Knappenberger; Guokui Liu; S Skanthakumar; Lynda Soderholm; David A Dixon; Thomas E Albrecht-Schmitt
Journal:  Nat Chem       Date:  2014-03-23       Impact factor: 24.427

9.  Macrocycle ring deformation as the secondary design principle for light-harvesting complexes.

Authors:  Luca De Vico; André Anda; Vladimir Al Osipov; Anders Ø Madsen; Thorsten Hansen
Journal:  Proc Natl Acad Sci U S A       Date:  2018-09-07       Impact factor: 11.205

10.  On the mechanism of photoinduced dimer dissociation in the plant UVR8 photoreceptor.

Authors:  Alexander A Voityuk; Rudolph A Marcus; Maria-Elisabeth Michel-Beyerle
Journal:  Proc Natl Acad Sci U S A       Date:  2014-03-17       Impact factor: 11.205

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.