Literature DB >> 30194231

Macrocycle ring deformation as the secondary design principle for light-harvesting complexes.

Luca De Vico1,2, André Anda2,3,4, Vladimir Al Osipov5,6, Anders Ø Madsen7, Thorsten Hansen8.   

Abstract

Natural light-harvesting is performed by pigment-protein complexes, which collect and funnel the solar energy at the start of photosynthesis. The identity and arrangement of pigments largely define the absorption spectrum of the antenna complex, which is further regulated by a palette of structural factors. Small alterations are induced by pigment-protein interactions. In light-harvesting systems 2 and 3 from Rhodoblastus acidophilus, the pigments are arranged identically, yet the former has an absorption peak at 850 nm that is blue-shifted to 820 nm in the latter. While the shift has previously been attributed to the removal of hydrogen bonds, which brings changes in the acetyl moiety of the bacteriochlorophyll, recent work has shown that other mechanisms are also present. Using computational and modeling tools on the corresponding crystal structures, we reach a different conclusion: The most critical factor for the shift is the curvature of the macrocycle ring. The bending of the planar part of the pigment is identified as the second-most important design principle for the function of pigment-protein complexes-a finding that can inspire the design of novel artificial systems.

Entities:  

Keywords:  LH3; MS-RASPT2; bacteriochlorophyll; chromophore mimics; macrocycle ring deformation

Mesh:

Substances:

Year:  2018        PMID: 30194231      PMCID: PMC6166793          DOI: 10.1073/pnas.1719355115

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  36 in total

1.  Absorption and CD spectroscopy and modeling of various LH2 complexes from purple bacteria.

Authors:  Sofia Georgakopoulou; Raoul N Frese; Evelyn Johnson; Corline Koolhaas; Richard J Cogdell; Rienk van Grondelle; Gert van der Zwan
Journal:  Biophys J       Date:  2002-04       Impact factor: 4.033

2.  Protein Effects on the Optical Spectrum of the Fenna-Matthews-Olson Complex from Fully Quantum Chemical Calculations.

Authors:  Carolin König; Johannes Neugebauer
Journal:  J Chem Theory Comput       Date:  2013-03-01       Impact factor: 6.006

3.  Chromophore-protein coupling beyond nonpolarizable models: understanding absorption in green fluorescent protein.

Authors:  Csaba Daday; Carles Curutchet; Adalgisa Sinicropi; Benedetta Mennucci; Claudia Filippi
Journal:  J Chem Theory Comput       Date:  2015-09-16       Impact factor: 6.006

4.  Contribution of bacteriochlorophyll conformation to the distribution of site-energies in the FMO protein.

Authors:  Stuart A MacGowan; Mathias O Senge
Journal:  Biochim Biophys Acta       Date:  2016-02-03

5.  Structural factors which control the position of the Q(y) absorption band of bacteriochlorophyll a in purple bacterial antenna complexes.

Authors:  R J Cogdell; T D Howard; N W Isaacs; K McLuskey; A T Gardiner
Journal:  Photosynth Res       Date:  2002       Impact factor: 3.573

6.  Single-reference ab initio methods for the calculation of excited states of large molecules.

Authors:  Andreas Dreuw; Martin Head-Gordon
Journal:  Chem Rev       Date:  2005-11       Impact factor: 60.622

7.  Atomistic modeling of two-dimensional electronic spectra and excited-state dynamics for a Light Harvesting 2 complex.

Authors:  C P van der Vegte; J D Prajapati; U Kleinekathöfer; J Knoester; T L C Jansen
Journal:  J Phys Chem B       Date:  2015-01-16       Impact factor: 2.991

8.  In situ mapping of the energy flow through the entire photosynthetic apparatus.

Authors:  Jakub Dostál; Jakub Pšenčík; Donatas Zigmantas
Journal:  Nat Chem       Date:  2016-05-30       Impact factor: 24.427

9.  The structure and thermal motion of the B800-850 LH2 complex from Rps.acidophila at 2.0A resolution and 100K: new structural features and functionally relevant motions.

Authors:  Miroslav Z Papiz; Steve M Prince; Tina Howard; Richard J Cogdell; Neil W Isaacs
Journal:  J Mol Biol       Date:  2003-03-07       Impact factor: 5.469

10.  Normal mode analysis of the spectral density of the Fenna-Matthews-Olson light-harvesting protein: how the protein dissipates the excess energy of excitons.

Authors:  Thomas Renger; Alexander Klinger; Florian Steinecker; Marcel Schmidt am Busch; Jorge Numata; Frank Müh
Journal:  J Phys Chem B       Date:  2012-12-10       Impact factor: 2.991

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  5 in total

1.  Quantum chemical elucidation of a sevenfold symmetric bacterial antenna complex.

Authors:  Lorenzo Cupellini; Pu Qian; Tu C Nguyen-Phan; Alastair T Gardiner; Richard J Cogdell
Journal:  Photosynth Res       Date:  2022-06-08       Impact factor: 3.573

Review 2.  Artificial Photosynthesis: Is Computation Ready for the Challenge Ahead?

Authors:  Silvio Osella
Journal:  Nanomaterials (Basel)       Date:  2021-01-24       Impact factor: 5.076

3.  Absorption and Circular Dichroism Spectra of Molecular Aggregates With the Full Cumulant Expansion.

Authors:  Lorenzo Cupellini; Filippo Lipparini; Jianshu Cao
Journal:  J Phys Chem B       Date:  2020-09-21       Impact factor: 2.991

4.  Effects of Detergents on the Spectral Features of B820 Bacteriochlorophyll a in Light-Harvesting Complex 3.

Authors:  Yoshitaka Saga; Kohei Hamanishi
Journal:  ACS Omega       Date:  2022-08-11

5.  The molecular mechanisms of light adaption in light-harvesting complexes of purple bacteria revealed by a multiscale modeling.

Authors:  Felipe Cardoso Ramos; Michele Nottoli; Lorenzo Cupellini; Benedetta Mennucci
Journal:  Chem Sci       Date:  2019-09-27       Impact factor: 9.825

  5 in total

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