Literature DB >> 21517033

Probing amyloid fibril growth by two-dimensional near-ultraviolet spectroscopy.

Jun Jiang1, Shaul Mukamel.   

Abstract

Keeping track of the aggregation kinetics of amyloid fibrils is essential for understanding their formation mechanism and eventually developing treatments for misfolded protein-related diseases. A simulation study of a series of Aβ(9-40) amyloid fibrils with different size shows that novel two-dimensional near-ultraviolet (2DNUV) spectra contain characteristic signatures of interactions between peptides. Chiral 2DNUV signals show a larger degree of exciton delocalization compared to their nonchiral counterparts. Intensities of specific peaks provide a direct measure of the number of peptides in a fibril. These signals could be used to monitor the fibril growth kinetics, one peptide at a time.
© 2011 American Chemical Society

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Year:  2011        PMID: 21517033      PMCID: PMC3112003          DOI: 10.1021/jp201164u

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  41 in total

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2.  Simulation of two-dimensional infrared spectroscopy of amyloid fibrils.

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4.  Aggregator compounds confound amyloid fibrillization assay.

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Journal:  Nat Chem Biol       Date:  2008-03       Impact factor: 15.040

Review 5.  Coherent multidimensional optical spectroscopy of excitons in molecular aggregates; quasiparticle versus supermolecule perspectives.

Authors:  Darius Abramavicius; Benoit Palmieri; Dmitri V Voronine; Frantisek Sanda; Shaul Mukamel
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6.  Generation of high-energy sub-20 fs pulses tunable in the 250-310 nm region by frequency doubling of a high-power noncollinear optical parametric amplifier.

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7.  Simulation study of chiral two-dimensional ultraviolet spectroscopy of the protein backbone.

Authors:  Darius Abramavicius; Jun Jiang; Benjamin M Bulheller; Jonathan D Hirst; Shaul Mukamel
Journal:  J Am Chem Soc       Date:  2010-06-09       Impact factor: 15.419

8.  Amyloid-β protein oligomerization and the importance of tetramers and dodecamers in the aetiology of Alzheimer's disease.

Authors:  Summer L Bernstein; Nicholas F Dupuis; Noel D Lazo; Thomas Wyttenbach; Margaret M Condron; Gal Bitan; David B Teplow; Joan-Emma Shea; Brandon T Ruotolo; Carol V Robinson; Michael T Bowers
Journal:  Nat Chem       Date:  2009-07       Impact factor: 24.427

9.  Oligomerization of beta-amyloid of the Alzheimer's and the Dutch-cerebral-haemorrhage types.

Authors:  A K Sian; E R Frears; O M El-Agnaf; B P Patel; M F Manca; G Siligardi; R Hussain; B M Austen
Journal:  Biochem J       Date:  2000-07-01       Impact factor: 3.857

10.  Coherent multidimensional optical probes for electron correlations and exciton dynamics: from NMR to X-rays.

Authors:  Shaul Mukamel; Darius Abramavicius; Lijun Yang; Wei Zhuang; Igor V Schweigert; Dmitri V Voronine
Journal:  Acc Chem Res       Date:  2009-04-21       Impact factor: 22.384

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  5 in total

1.  Distinguishing amyloid fibril structures in Alzheimer's disease (AD) by two-dimensional ultraviolet (2DUV) spectroscopy.

Authors:  A R Lam; J Jiang; S Mukamel
Journal:  Biochemistry       Date:  2011-10-20       Impact factor: 3.162

2.  Two-dimensional stimulated resonance Raman spectroscopy study of the Trp-cage peptide folding.

Authors:  Hao Ren; Zaizhi Lai; Jason D Biggs; Jin Wang; Shaul Mukamel
Journal:  Phys Chem Chem Phys       Date:  2013-11-28       Impact factor: 3.676

3.  Machine learning recognition of protein secondary structures based on two-dimensional spectroscopic descriptors.

Authors:  Hao Ren; Qian Zhang; Zhengjie Wang; Guozhen Zhang; Hongzhang Liu; Wenyue Guo; Shaul Mukamel; Jun Jiang
Journal:  Proc Natl Acad Sci U S A       Date:  2022-04-27       Impact factor: 12.779

4.  Monitoring the folding of Trp-cage peptide by two-dimensional infrared (2DIR) spectroscopy.

Authors:  Zaizhi Lai; Nicholas K Preketes; Shaul Mukamel; Jin Wang
Journal:  J Phys Chem B       Date:  2013-04-05       Impact factor: 2.991

5.  Disentangling Peptide Configurations via Two-Dimensional Electronic Spectroscopy: Ab Initio Simulations Beyond the Frenkel Exciton Hamiltonian.

Authors:  Artur Nenov; Ivan Rivalta; Giulio Cerullo; Shaul Mukamel; Marco Garavelli
Journal:  J Phys Chem Lett       Date:  2014-02-07       Impact factor: 6.475

  5 in total

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