Literature DB >> 19499346

Cre-lox univector acceptor vectors for functional screening in protoplasts: analysis of Arabidopsis donor cDNAs encoding ABSCISIC ACID INSENSITIVE1-like protein phosphatases.

Fan Jia1, Srinivas S L Gampala, Amandeep Mittal, Qingjun Luo, Christopher D Rock.   

Abstract

The 14,200 available full length Arabidopsis thaliana cDNAs in the universal plasmid system (UPS) donor vector pUNI51 should be applied broadly and efficiently to leverage a "functional map-space" of homologous plant genes. We have engineered Cre-lox UPS host acceptor vectors (pCR701- 705) with N-terminal epitope tags in frame with the loxH site and downstream from the maize Ubiquitin promoter for use in transient protoplast expression assays and particle bombardment transformation of monocots. As an example of the utility of these vectors, we recombined them with several Arabidopsis cDNAs encoding Ser/Thr protein phosphatase type 2C (PP2Cs) known from genetic studies or predicted by hierarchical clustering meta-analysis to be involved in ABA and stress responses. Our functional results in Zea mays mesophyll protoplasts on ABA-inducible expression effects on the Late Embryogenesis Abundant promoter ProEm:GUS reporter were consistent with predictions and resulted in identification of novel activities of some PP2Cs. Deployment of these vectors can facilitate functional genomics and proteomics and identification of novel gene activities.

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Year:  2009        PMID: 19499346      PMCID: PMC2755202          DOI: 10.1007/s11103-009-9502-1

Source DB:  PubMed          Journal:  Plant Mol Biol        ISSN: 0167-4412            Impact factor:   4.076


  113 in total

1.  A gene expression map of Arabidopsis thaliana development.

Authors:  Markus Schmid; Timothy S Davison; Stefan R Henz; Utz J Pape; Monika Demar; Martin Vingron; Bernhard Schölkopf; Detlef Weigel; Jan U Lohmann
Journal:  Nat Genet       Date:  2005-04-03       Impact factor: 38.330

2.  Cell type-specific expression profiling in plants via cell sorting of protoplasts from fluorescent reporter lines.

Authors:  Kenneth Birnbaum; Jee W Jung; Jean Y Wang; Georgina M Lambert; John A Hirst; David W Galbraith; Philip N Benfey
Journal:  Nat Methods       Date:  2005-08       Impact factor: 28.547

3.  Gene-expression analysis and network discovery using Genevestigator.

Authors:  Philip Zimmermann; Lars Hennig; Wilhelm Gruissem
Journal:  Trends Plant Sci       Date:  2005-09       Impact factor: 18.313

4.  Compilation of mRNA polyadenylation signals in Arabidopsis revealed a new signal element and potential secondary structures.

Authors:  Johnny C Loke; Eric A Stahlberg; David G Strenski; Brian J Haas; Paul Chris Wood; Qingshun Quinn Li
Journal:  Plant Physiol       Date:  2005-06-17       Impact factor: 8.340

5.  Molecular cloning in Arabidopsis thaliana of a new protein phosphatase 2C (PP2C) with homology to ABI1 and ABI2.

Authors:  P L Rodriguez; M P Leube; E Grill
Journal:  Plant Mol Biol       Date:  1998-11       Impact factor: 4.076

6.  The univector plasmid-fusion system, a method for rapid construction of recombinant DNA without restriction enzymes.

Authors:  Q Liu; M Z Li; D Leibham; D Cortez; S J Elledge
Journal:  Curr Biol       Date:  1998-12-03       Impact factor: 10.834

Review 7.  Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.

Authors:  S F Altschul; T L Madden; A A Schäffer; J Zhang; Z Zhang; W Miller; D J Lipman
Journal:  Nucleic Acids Res       Date:  1997-09-01       Impact factor: 16.971

8.  ABI2, a second protein phosphatase 2C involved in abscisic acid signal transduction in Arabidopsis.

Authors:  P L Rodriguez; G Benning; E Grill
Journal:  FEBS Lett       Date:  1998-01-16       Impact factor: 4.124

9.  Redundant and distinct functions of the ABA response loci ABA-INSENSITIVE(ABI)5 and ABRE-BINDING FACTOR (ABF)3.

Authors:  Ruth Finkelstein; Srinivas S L Gampala; Tim J Lynch; Terry L Thomas; Christopher D Rock
Journal:  Plant Mol Biol       Date:  2005-09       Impact factor: 4.076

10.  Mutational analysis of protein phosphatase 2C involved in abscisic acid signal transduction in higher plants.

Authors:  J Sheen
Journal:  Proc Natl Acad Sci U S A       Date:  1998-02-03       Impact factor: 11.205

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  1 in total

1.  Related to ABA-Insensitive3(ABI3)/Viviparous1 and AtABI5 transcription factor coexpression in cotton enhances drought stress adaptation.

Authors:  Amandeep Mittal; Srinivas S L Gampala; Glen L Ritchie; Paxton Payton; John J Burke; Christopher D Rock
Journal:  Plant Biotechnol J       Date:  2014-02-01       Impact factor: 9.803

  1 in total

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