| Literature DB >> 19497115 |
Yufei Guo1, Anchun Cheng, Mingshu Wang, Chanjuan Shen, Renyong Jia, Shun Chen, Na Zhang.
Abstract
BACKGROUND: Anatid herpesvirus 1 (AHV-1) is an alphaherpesvirus associated with latent infection and mortality in ducks and geese and is currently affecting the world-wide waterfowl production severely. Here we describe a fluorescent quantitative real-time PCR (FQ-PCR) method developed for fast measurement of AHV-1 DNA based on TaqMan MGB technology.Entities:
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Year: 2009 PMID: 19497115 PMCID: PMC2696427 DOI: 10.1186/1743-422X-6-71
Source DB: PubMed Journal: Virol J ISSN: 1743-422X Impact factor: 4.099
Figure 1Establishment of the fluorescent quantitative real-time PCR standard curve. Standard curve of the AHV-1 fluorescent quantitative real-time PCR. Ten-fold dilutions of standard DNA ranging from 1.0 × 109 to 1.0 × 102 copies/μL were used, as indicated in the x-axis, whereas the corresponding cycle threshold (CT) values are presented on the y-axis. Each dot represents the result of triplicate amplification of each dilution. The correlation coefficient and the slope value of the regression curve were calculated and are indicated.
Intra- and inter-assay variability of the established FQ-PCR assay
| Dilution of standard (copies/reaction) | Intra-assay | Inter-assay | ||||
| Mean | SD | CV (%) | Mean | SD | CV (%) | |
| 1010 | 7.0 | 0.30 | 4.3 | 6.9 | 0.34 | 4.9 |
| 109 | 9.9 | 0.19 | 1.8 | 10.1 | 0.23 | 2.3 |
| 108 | 13.4 | 0.25 | 1.9 | 13.6 | 0.34 | 2.5 |
| 107 | 16.9 | 0.29 | 1.7 | 17.0 | 0.36 | 2.1 |
| 106 | 20.8 | 0.33 | 1.6 | 20.9 | 0.40 | 1.9 |
| 105 | 24.7 | 0.37 | 1.5 | 24.7 | 0.49 | 2.0 |
| 104 | 28.6 | 0.49 | 1.7 | 28.7 | 0.77 | 2.7 |
| 103 | 32.3 | 0.52 | 1.6 | 32.2 | 0.90 | 2.8 |
| 102 | 35.4 | 0.81 | 2.3 | 35.3 | 1.16 | 3.3 |
| 101 | 37.2 | 2.31 | 6.2 | 37.5 | 2.51 | 6.7 |
AHV-1 viral load in different clinical samples
| Sample name | DNA amounts (copies) |
| DEF cell culture supernatant | 5.67 × 106/μL |
| DEF cell culture | 1.05 × 109/μL |
| Allantoid fluid | 2.85 × 106/μL |
| Liver | 2.73 × 109/g |
| Brain | 2.20 × 107/g |
| Bursa of Fabricius | 9.47 × 109/g |
| Thymus | 1.09 × 109/g |
| Spleen | 3.59 × 109/g |
| Esophagus | 9.56 × 109/g |
| Duodenum | 3.92 × 107/g |
| Ileum | 1.83 × 108/g |
| Kidney | 1.78 × 108/g |
| Lung | 3.15 × 108/g |
| Peripheral blood | 2.16 × 106/μL |
| Cloacal swab | 2.11 × 108/swab |
| Oral swab | 2.83 × 108/swab |
Oligonucleotide sequences of primers and probes used in AHV-1 FQ-PCR detection
| Name | Type | Sequences (5'to 3') | Length (nt) | Position | Amplicon size (bp) |
| Real-Fa | Forward | ttttcctcctcctcgctgagt | 21 | 357–377 | 60 |
| Real-Pa | Probe | ccctgggtacaagcgc | 16 | 383–398 | |
| Real-Ra | Reverse | ggccgggtttgcagaagt | 18 | 399–416 | |
| Con-Fb | Forward | ggacagcgtaccacagataa | 20 | 246–265 | 498 |
| Con-Rb | Reverse | acaaatcccaagcgtag | 17 | 727–743 | |
| IC-Fc | Forward | acgagcgcaacccttga | 17 | 1054–1070 | 92 |
| IC-Pc | Probe | cggtttgtcaccggcagtcacct | 23 | 1103–1125 | |
| IC-Rc | Reverse | acgtcatccccaccttact | 19 | 1127–1145 |
a Based on the nucleotide sequence AF064639.
b Based on the nucleotide sequence AF064639.
c Based on the nucleotide sequence AJ971894.