Literature DB >> 19489723

RNA polymerase active center: the molecular engine of transcription.

Evgeny Nudler1.   

Abstract

RNA polymerase (RNAP) is a complex molecular machine that governs gene expression and its regulation in all cellular organisms. To accomplish its function of accurately producing a full-length RNA copy of a gene, RNAP performs a plethora of chemical reactions and undergoes multiple conformational changes in response to cellular conditions. At the heart of this machine is the active center, the engine, which is composed of distinct fixed and moving parts that serve as the ultimate acceptor of regulatory signals and as the target of inhibitory drugs. Recent advances in the structural and biochemical characterization of RNAP explain the active center at the atomic level and enable new approaches to understanding the entire transcription mechanism, its exceptional fidelity and control.

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Year:  2009        PMID: 19489723      PMCID: PMC2929140          DOI: 10.1146/annurev.biochem.76.052705.164655

Source DB:  PubMed          Journal:  Annu Rev Biochem        ISSN: 0066-4154            Impact factor:   23.643


  146 in total

Review 1.  The RNA polymerase II elongation complex.

Authors:  Ali Shilatifard; Ronald C Conaway; Joan Weliky Conaway
Journal:  Annu Rev Biochem       Date:  2003-03-27       Impact factor: 23.643

2.  Transcript cleavage factors GreA and GreB act as transient catalytic components of RNA polymerase.

Authors:  Oleg Laptenko; Jookyung Lee; Ivan Lomakin; Sergei Borukhov
Journal:  EMBO J       Date:  2003-12-01       Impact factor: 11.598

3.  The flap domain is required for pause RNA hairpin inhibition of catalysis by RNA polymerase and can modulate intrinsic termination.

Authors:  Innokenti Toulokhonov; Robert Landick
Journal:  Mol Cell       Date:  2003-11       Impact factor: 17.970

4.  Molecular mechanism of transcription inhibition by peptide antibiotic Microcin J25.

Authors:  Karen Adelman; Julia Yuzenkova; Arthur La Porta; Nikolay Zenkin; Jookyung Lee; John T Lis; Sergei Borukhov; Michelle D Wang; Konstantin Severinov
Journal:  Mol Cell       Date:  2004-06-18       Impact factor: 17.970

Review 5.  The RNA polymerase II transcription cycle: cycling through chromatin.

Authors:  Jesper Q Svejstrup
Journal:  Biochim Biophys Acta       Date:  2004-03-15

6.  Structural basis of transcription: separation of RNA from DNA by RNA polymerase II.

Authors:  Kenneth D Westover; David A Bushnell; Roger D Kornberg
Journal:  Science       Date:  2004-02-13       Impact factor: 47.728

7.  Transcription through the roadblocks: the role of RNA polymerase cooperation.

Authors:  Vitaly Epshtein; Francine Toulmé; A Rachid Rahmouni; Sergei Borukhov; Evgeny Nudler
Journal:  EMBO J       Date:  2003-09-15       Impact factor: 11.598

8.  Donation of catalytic residues to RNA polymerase active center by transcription factor Gre.

Authors:  Ekaterina Sosunova; Vasily Sosunov; Maxim Kozlov; Vadim Nikiforov; Alex Goldfarb; Arkady Mustaev
Journal:  Proc Natl Acad Sci U S A       Date:  2003-12-10       Impact factor: 11.205

9.  Structural basis for transcription regulation by alarmone ppGpp.

Authors:  Irina Artsimovitch; Vsevolod Patlan; Shun-ichi Sekine; Marina N Vassylyeva; Takeshi Hosaka; Kozo Ochi; Shigeyuki Yokoyama; Dmitry G Vassylyev
Journal:  Cell       Date:  2004-04-30       Impact factor: 41.582

10.  Antibacterial peptide microcin J25 inhibits transcription by binding within and obstructing the RNA polymerase secondary channel.

Authors:  Jayanta Mukhopadhyay; Elena Sineva; Jennifer Knight; Ronald M Levy; Richard H Ebright
Journal:  Mol Cell       Date:  2004-06-18       Impact factor: 17.970

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  65 in total

1.  Importance of steric effects on the efficiency and fidelity of transcription by T7 RNA polymerase.

Authors:  Sébastien Ulrich; Eric T Kool
Journal:  Biochemistry       Date:  2011-11-01       Impact factor: 3.162

2.  Tagetitoxin inhibits RNA polymerase through trapping of the trigger loop.

Authors:  Irina Artsimovitch; Vladimir Svetlov; Sondra Maureen Nemetski; Vitaly Epshtein; Timothy Cardozo; Evgeny Nudler
Journal:  J Biol Chem       Date:  2011-10-05       Impact factor: 5.157

3.  Cooperation between translating ribosomes and RNA polymerase in transcription elongation.

Authors:  Sergey Proshkin; A Rachid Rahmouni; Alexander Mironov; Evgeny Nudler
Journal:  Science       Date:  2010-04-23       Impact factor: 47.728

4.  Identification of multiple rate-limiting steps during the human mitochondrial transcription cycle in vitro.

Authors:  Maria F Lodeiro; Akira U Uchida; Jamie J Arnold; Shelley L Reynolds; Ibrahim M Moustafa; Craig E Cameron
Journal:  J Biol Chem       Date:  2010-03-29       Impact factor: 5.157

5.  Templating efficiency of naked DNA.

Authors:  Eric Kervio; Annette Hochgesand; Ulrich E Steiner; Clemens Richert
Journal:  Proc Natl Acad Sci U S A       Date:  2010-06-16       Impact factor: 11.205

6.  RNA polymerase backtracking in gene regulation and genome instability.

Authors:  Evgeny Nudler
Journal:  Cell       Date:  2012-06-22       Impact factor: 41.582

7.  A high density of cis-information terminates RNA Polymerase III on a 2-rail track.

Authors:  Aneeshkumar G Arimbasseri; Richard J Maraia
Journal:  RNA Biol       Date:  2015-12-04       Impact factor: 4.652

Review 8.  Bacterial Transcription as a Target for Antibacterial Drug Development.

Authors:  Cong Ma; Xiao Yang; Peter J Lewis
Journal:  Microbiol Mol Biol Rev       Date:  2016-01-13       Impact factor: 11.056

9.  A high level of mutation tolerance in the multifunctional sequence encoding the RNA encapsidation signal of an avian hepatitis B virus and slow evolution rate revealed by in vivo infection.

Authors:  Bernadette Schmid; Christine Rösler; Michael Nassal
Journal:  J Virol       Date:  2011-07-13       Impact factor: 5.103

Review 10.  Transcription termination by the eukaryotic RNA polymerase III.

Authors:  Aneeshkumar G Arimbasseri; Keshab Rijal; Richard J Maraia
Journal:  Biochim Biophys Acta       Date:  2012-10-23
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