Literature DB >> 19482025

Switching in amyloid structure within individual fibrils: implication for strain adaptation, species barrier and strain classification.

Ilia V Baskakov1.   

Abstract

Amyloid fibrils are highly ordered crystal-like structures. It is generally assumed that individual amyloid fibrils consist of conformationally uniform cross-beta-sheet structures that enable the amyloids to replicate their individual conformations via a template-dependent mechanism. Recent studies revealed that amyloids are capable of accommodating a global conformational switch from one amyloid strain to another within individual fibrils. The current review highlights the high adaptation potential of amyloid structures and discusses the implication of these findings for several emerging issues including prion strain adaptation (i.e. gradual change in strain structure). It also proposes that the catalytic activity of an amyloid structure should be separated from its templating effect, and raises the question of strain classification according to their promiscuous or species-specific nature.

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Year:  2009        PMID: 19482025      PMCID: PMC2752868          DOI: 10.1016/j.febslet.2009.05.044

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  42 in total

1.  Structure of the cross-beta spine of amyloid-like fibrils.

Authors:  Rebecca Nelson; Michael R Sawaya; Melinda Balbirnie; Anders Ø Madsen; Christian Riekel; Robert Grothe; David Eisenberg
Journal:  Nature       Date:  2005-06-09       Impact factor: 49.962

Review 2.  Molecular structure of amyloid fibrils: insights from solid-state NMR.

Authors:  Robert Tycko
Journal:  Q Rev Biophys       Date:  2006-06-13       Impact factor: 5.318

3.  Visualization of aggregation of the Rnq1 prion domain and cross-seeding interactions with Sup35NM.

Authors:  Yakov A Vitrenko; Elena O Gracheva; Janet E Richmond; Susan W Liebman
Journal:  J Biol Chem       Date:  2006-11-22       Impact factor: 5.157

Review 4.  The structural biology of protein aggregation diseases: Fundamental questions and some answers.

Authors:  David Eisenberg; Rebecca Nelson; Michael R Sawaya; Melinda Balbirnie; Shilpa Sambashivan; Magdalena I Ivanova; Anders Ø Madsen; Christian Riekel
Journal:  Acc Chem Res       Date:  2006-09       Impact factor: 22.384

5.  Polymorphism and ultrastructural organization of prion protein amyloid fibrils: an insight from high resolution atomic force microscopy.

Authors:  Maighdlin Anderson; Olga V Bocharova; Natallia Makarava; Leonid Breydo; Vadim V Salnikov; Ilia V Baskakov
Journal:  J Mol Biol       Date:  2006-02-20       Impact factor: 5.469

6.  Site-specific conformational studies of prion protein (PrP) amyloid fibrils revealed two cooperative folding domains within amyloid structure.

Authors:  Ying Sun; Leonid Breydo; Natallia Makarava; Qingyuan Yang; Olga V Bocharova; Ilia V Baskakov
Journal:  J Biol Chem       Date:  2007-01-23       Impact factor: 5.157

7.  Continuum of prion protein structures enciphers a multitude of prion isolate-specified phenotypes.

Authors:  Giuseppe Legname; Hoang-Oanh B Nguyen; David Peretz; Fred E Cohen; Stephen J DeArmond; Stanley B Prusiner
Journal:  Proc Natl Acad Sci U S A       Date:  2006-12-01       Impact factor: 11.205

8.  Protein fibrils in nature can enhance amyloid protein A amyloidosis in mice: Cross-seeding as a disease mechanism.

Authors:  Katarzyna Lundmark; Gunilla T Westermark; Arne Olsén; Per Westermark
Journal:  Proc Natl Acad Sci U S A       Date:  2005-04-13       Impact factor: 11.205

9.  A native to amyloidogenic transition regulated by a backbone trigger.

Authors:  Catherine M Eakin; Andrea J Berman; Andrew D Miranker
Journal:  Nat Struct Mol Biol       Date:  2006-02-19       Impact factor: 15.369

10.  Synthetic prions generated in vitro are similar to a newly identified subpopulation of PrPSc from sporadic Creutzfeldt-Jakob Disease.

Authors:  Olga V Bocharova; Leonid Breydo; Vadim V Salnikov; Andrew C Gill; Ilia V Baskakov
Journal:  Protein Sci       Date:  2005-03-31       Impact factor: 6.725

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  20 in total

Review 1.  Emergence and natural selection of drug-resistant prions.

Authors:  James Shorter
Journal:  Mol Biosyst       Date:  2010-04-27

2.  Complement protein C1q forms a complex with cytotoxic prion protein oligomers.

Authors:  Paul Erlich; Chantal Dumestre-Pérard; Wai Li Ling; Catherine Lemaire-Vieille; Guy Schoehn; Gérard J Arlaud; Nicole M Thielens; Jean Gagnon; Jean-Yves Cesbron
Journal:  J Biol Chem       Date:  2010-04-21       Impact factor: 5.157

3.  Generation of prions in vitro and the protein-only hypothesis.

Authors:  Rodrigo Diaz-Espinoza; Claudio Soto
Journal:  Prion       Date:  2010-04-05       Impact factor: 3.931

4.  Mammalian prion amyloid formation in bacteria.

Authors:  Bruno Macedo; Yraima Cordeiro; Salvador Ventura
Journal:  Prion       Date:  2016-03-03       Impact factor: 3.931

Review 5.  Amyloidogenesis of Tau protein.

Authors:  Bartosz Nizynski; Wojciech Dzwolak; Krzysztof Nieznanski
Journal:  Protein Sci       Date:  2017-09-13       Impact factor: 6.725

6.  Coinfecting prion strains compete for a limiting cellular resource.

Authors:  Ronald A Shikiya; Jacob I Ayers; Charles R Schutt; Anthony E Kincaid; Jason C Bartz
Journal:  J Virol       Date:  2010-03-17       Impact factor: 5.103

7.  Two amyloid States of the prion protein display significantly different folding patterns.

Authors:  Valeriy G Ostapchenko; Michael R Sawaya; Natallia Makarava; Regina Savtchenko; K Peter R Nilsson; David Eisenberg; Ilia V Baskakov
Journal:  J Mol Biol       Date:  2010-05-27       Impact factor: 5.469

8.  Atomic force fluorescence microscopy in the characterization of amyloid fibril assembly and oligomeric intermediates.

Authors:  Valeriy Ostapchenko; Maria Gasset; Ilia V Baskakov
Journal:  Methods Mol Biol       Date:  2012

Review 9.  Experimentally-driven protein structure modeling.

Authors:  Nikolay V Dokholyan
Journal:  J Proteomics       Date:  2020-04-05       Impact factor: 4.044

10.  Infrared microspectroscopy detects protein misfolding cyclic amplification (PMCA)-induced conformational alterations in hamster scrapie progeny seeds.

Authors:  Martin L Daus; Katja Wagenführ; Achim Thomzig; Susann Boerner; Peter Hermann; Antje Hermelink; Michael Beekes; Peter Lasch
Journal:  J Biol Chem       Date:  2013-10-25       Impact factor: 5.157

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